Seriola lalandi dorsalis (Yellowtail amberjack): 111672118
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Entry
111672118 CDS
T06058
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03440
Homologous recombination
slal03450
Non-homologous end-joining
slal04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111672118 (rad50)
03450 Non-homologous end-joining
111672118 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
111672118 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slal03032
]
111672118 (rad50)
03400 DNA repair and recombination proteins [BR:
slal03400
]
111672118 (rad50)
DNA replication proteins [BR:
slal03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
111672118 (rad50)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
111672118 (rad50)
BRCA1-C complex
111672118 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
111672118 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
111672118
NCBI-ProteinID:
XP_023285187
Ensembl:
ENSSLDG00000006735
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYATAGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGDKVTIHRSMSCTQKAKSYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISALGVSKSVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRLAQNHTVKQCQVELRYLKQNKEKAQQIRDTVATKEAQLMASRDS
IQQIESQIDPLENRLMDIDTKLGKVMKLDNDIKALESRKKQMEEDNRELEETMEQVFQGS
DEQLQDIYQNHQRTVREKERRLTDCQKEVERAGRECQRLNRVKADLLVEQGRLQLEADRH
TQNIKNRDTQVRSLSSYLEMEGYDRPPFTTLQLESFHRHVTQRLEQEKEAVHQVLADLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQEMRNVRAELQRLEGSSTRLQELEKE
LAKAERELQSAVQSSNVEELKAEVVELQREKAELDRAQRQLDQEMEMLNTHTTARTQMEM
LNKDKTEKEDQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYAKSKEINGTRDRLAKLNKD
LASSEQNKSHISAELRKKEQQLASDEEKFFNVCGSQDLEQDLGKLGEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEGDLK
RKERKRDEMMALRPVRQSIVQFQEKELPELKNRLQTVNREIERLKGDVEEQETLLCTLMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDRIQMLKSAVNETRAEKLQLSSDMQKQQQLEEQCVEFTTEIQT
LTRDIRDAKEQLSPLSAALEKLQQEKQELVDRQRQRQEEGQEKVSSIKERVKALTTLERD
ITKYVDEGKDEYKEQKESELQETNTQLHEAEKQKEKITKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKRDALMKDIGNMQDLQLRQERREAERKLEDLKKNRSIALGRQKG
FEEEILHYRKELREDQYDKADERYKNKMIIMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIHKNQDQNSEITKCSINSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagatagacaagatgagcatcctgggcgtgaggagctttgggattgaggataaa
gacaaacaagtcatatctttcttttctcctctgactgtgctggttggacccaatggagca
gggaagacgactattattgagtgccttaagtatgcaacagcaggagaacttcctcctgga
tctaaagggggtgcctttgttcatgatccaaaggacgcccatgagacagatgtgcgagca
cagattcgcctcttattcacagacgttaatggagataaagtgaccatccatcgctccatg
tcatgcactcagaaggcaaagagctactccttcaaaagcttagagcaggtcatcaccaga
ataaaagacggtgagaaggtgagcttgtcatctaagtgtggtgaactggaccgggagatg
atttctgccttgggtgtatcgaagtctgtgctgaatcacgtcatcttctgtcaccaagaa
gagtctaactggccactgagtgagggcaaggctctcaaagacaagtttgactccatcttc
gctgcaaccaagtatatcaaagctctggagacgatgcgccagctgcgtctcgcacagaac
cacacggtcaaacagtgtcaggtggagctgcgctacctgaagcagaacaaggagaaggcc
cagcagattagagacaccgtggccaccaaggaggctcagctgatggcgtctagggacagc
atccaacagatagagagccagattgatccacttgagaatcgactgatggatattgataca
aaacttgggaaagtgatgaaactggacaacgacatcaaggctttagagagcaggaaaaaa
caaatggaggaggacaacagggagctggaggaaacaatggaacaggtgtttcagggttca
gatgagcagctgcaggacatttatcagaaccaccagaggacagtgagggagaaggagcgg
aggctgacagactgccagaaggaggtggagagagctggccgcgagtgtcagagactgaac
agagtcaaggctgatctgctggtagaacaaggtcgtcttcagctggaggccgaccgccac
acccaaaacatcaagaaccgtgacactcaggttcgctctttgtcttcctacctggaaatg
gagggttatgaccgaccgcccttcaccactcttcagcttgagagttttcaccgtcacgtc
actcagagactggagcaggaaaaagaggcagtccatcaggttttggcggacctgcaggaa
aaagagcagcagaagcagcagtccattgatgaaatgagggataagaagaccggcctggag
agaacagtggagctgaagagagacctgcagggaaagaagcagcaagaaatgaggaacgtc
agagcagagctgcagaggctggaggggtcgtcgactcgactgcaagagctggagaaagaa
ttggccaaagcggagcgcgagctgcagagcgcagtgcagagctccaacgtggaggagctg
aaggccgaggtcgtggagctccagagggaaaaggccgaacttgaccgcgcacagagacag
ctcgaccaagaaatggagatgctcaacacacacacgaccgcacgcacacaaatggagatg
ctgaataaagacaagacagaaaaggaggaccaggtacgtaagatcaaatctcgtcacagc
gaggatctggtgtcattactgggccactttcccaacaagagagagctggaagactggatc
tacgccaagtctaaggaaatcaacggtaccagggacagacttgccaaactcaataaggac
ctggcatcaagtgagcagaataaaagccatatttctgctgagctgcgtaagaaggagcag
cagttagccagtgacgaagagaagttcttcaatgtgtgtggcagtcaggatctggagcag
gacctgggcaaactgggggaagatctggagaagatatctaaacaaagagccatgctagca
ggagccacagcagtgtacacccagttcatcagccagctgacagaggagagagagccctgc
tgccctgtctgccagcggacgttcccctcagagtctgatctgcaggaggtcatcagcgac
atgcagtccaaactgcgcctggtgcccgacaagctgaaaaacactgagggggacctgaag
aggaaggagaggaagagagatgagatgatggctctcagacctgtcaggcagtccattgta
cagtttcaggaaaaggagttgcctgagctgaaaaaccgtctgcagactgtgaacagagaa
atcgagaggctgaagggagacgtggaggagcaggagactctgctctgtaccctgatgtca
gaggaggaaacagccaaggcctgcctgcaggacatctctctcatggacagatacctgatg
gaccttaaagaagtggagaggaaaatagctcaacaggcagccaaactccagggagtagac
ctgaccagaaccatccagcaagtcagtcaggagaaacaagaaacacagcacaagctagac
accacctccagcaagatggagctgaaacgtaagctgatccaggaccagcaggaccggatt
cagatgctgaaaagtgctgtgaatgagacgagagcggagaagctccagctgagcagcgac
atgcagaaacagcagcagctggaagagcagtgtgtcgagttcaccaccgagatacagaca
ttaaccagggacatcagggacgcaaaggagcagctgtcccctttgtccgctgctctggag
aagctgcagcaggagaagcaggagctggtggatcgccagaggcagaggcaggaagaaggg
caggagaaggtcagttccattaaagagagagtgaaggcgctcaccaccttggagagagac
atcaccaaatacgttgacgagggcaaagatgaatacaaagagcaaaaagagtctgagctt
caagaaaccaacactcagctgcatgaggccgagaagcaaaaagagaagatcaccaaggag
atgggaaacatccgtcaggacatagacactcaaaaggtccaggagcgctggttgcaggac
aacctgaccttgaggaagcgtgtggaggagttgaaggaggttgtggctaaacgcgacgct
cttatgaaagacattggcaacatgcaagacttacagctacgccaagaaagacgtgaagca
gaacgcaagctggaagacttgaagaagaaccgcagtatagcactgggtcgtcagaaaggc
tttgaggaggagatactgcattacagaaaagagctgcgagaagatcagtacgacaaagct
gatgagcgctacaaaaacaagatgatcataatgagaaccacagagctggtaattaaagac
ctggatctctactacaaggcccttgatcaaacaatcatgaaattccacagtatgaagatg
gatgagatcaacaagattatcagagacctatggcgcagcacctacaggggtcaagatatt
gaatatgtggagatcaggtctgatgtggatgagaactcgtctgctggggtgaagcggagg
gtttacaactacagagtagttatggtgaaaggagacacagctttggacatgagaggacgc
tgcagtgccggtcagaaggtgttggcatccctgatcatccgcctagctctggcagagacc
ttctgtttaaattgtgggatcctggccctggatgagcccaccaccaacctcgaccgggag
aacattgagtcactggcacatgccctcgtcgaaatcattaagagtcgctctcgccagcgc
aacttccagcttctgatcatcacccacgacgaggatttcgtggagctgctggggcggtcc
agctacatcgaacacttctaccgtatccataagaaccaggaccagaattccgaaatcaca
aagtgtagcatcaattccctctcatcctatctccactga
DBGET
integrated database retrieval system
