Seriola lalandi dorsalis (Yellowtail amberjack): 111672593
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Entry
111672593 CDS
T06058
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111672593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slal03021
]
111672593
03019 Messenger RNA biogenesis [BR:
slal03019
]
111672593
Transcription machinery [BR:
slal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111672593
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111672593
U7-dependent histone pre-mRNA processing factors
111672593
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
111672593
NCBI-ProteinID:
XP_023285812
Ensembl:
ENSSLDG00000008469
LinkDB
All DBs
Position
Unknown
AA seq
704 aa
AA seq
DB search
MAAKRKPDTVVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTESDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPDEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQDQRISGILVKRNFSYHILTPSDLSDYTDLCMGTVKQTQAIPYSGPISLLVSQLRSL
AGDVEQVEGAEKITVRIFKSITLVHEAGMVLLEWIANPLNDMYADAITTVILEVQSNPTA
QKFIEGRKETFDMELFVERLELMLHDMFGDDCVNFKDGKNLSVTVDGVTAFIDPETRSVT
CTEDESLREMVEVAIQRLYDALSPAFSPRPLCDVSSSNTLSSVM
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaacgtaaacctgacacggttgttcccgcggaggaaagtgaccaactgctc
atccgcccgctaggagcaggacaagaggtgggacgatcctgcatcatcctggagttcaag
ggacggaagatcatgctggactgtgggatccatcctggtcttgagggaatggacgctctt
ccctacattgacctgattgatccggctgagattgacctgctgctcatcagccacttccac
ctggaccactgtggcgctctgccctggttcctgcagaagaccagttttaaaggacgaacc
ttcatgactcacgccaccaaggccatctaccgctggctgctgtccgactacgtcaaagtc
agtaacatctcagcggacgacatgctgtacactgagtcggacctggaggagagcatggag
aagatcgagaccatcaacttccacgaggtgaaggaagtggctggcatcaaattctggtgt
taccacgccggacacgtcctcggagccgccatgttcatgatcgagatcgccggcgtcaag
ttgttgtacacaggagatttctcccgtcaggaggacagacatctgatggcagccgagatc
cccagtgtcaaaccagacatcctcatcacagagtcgacgtacgggactcacatccacgag
aagcgagaggagagagaggctcgtttctgcaacaccgtccacgacatcgtgaacagggag
gggcgatgtctgatccccgtcttcgctctgggacgagcccaggagctgctgctcatcctg
gacgagtactggcagaaccacccggagctccacgacatccccatctactacgcttcgtct
ctggccaggaagtgcatggctgtgtaccagacctacatcaacgccatgaacgacaagatc
cgcaaggccatcaacatcaacaaccccttcgtctttaaacacatcagcaacctgaagagc
atggatcactttgacgacatcggccccagcgtggtgatggcgtctcccggtatgatgcag
agcggcttgtccagagagctgtttgagagctggtgcactgacaagaggaacggcgtcatc
atcgctggatactgcgtggagggaacactcgccaagcacatcatgacggagccagatgag
atcgccaccatgtcgggtcagaagcttcccctgaagatgtcagtggactacatctccttc
tctgctcacaccgactaccagcagaccagcgagttcatcagagcgctcaaaccccctcac
gtgattctggtccatggcgagcagaacgagatggcccgtctgaaggcggctctgatccgc
gagtacgaagacaacgacgaggttcacatcgaagtccacaacccgcgaaacacagaggcc
gtgacgctgaacttcagaggagagaaactggccaaggtgatgggctctctggctgacaaa
aagtgtgctcaggatcagaggatttccgggatcctcgtcaagagaaacttcagctatcac
atcctgacaccctccgacctctccgactacacagatctgtgtatgggcacagtgaagcag
acccaagccatcccatacagcggacccatctccctgctggtcagccagctacgaagcctc
gcaggagacgtggagcaggtggagggagcagagaagatcaccgtcaggatctttaagagc
atcactctggttcacgaggccggcatggtgctgctggagtggatcgccaacccgctcaac
gacatgtacgccgacgccatcaccacagtgatcctggaggtccagtccaaccccacagcc
cagaaatttattgaaggcaggaaggaaaccttcgacatggagctgtttgtcgagagactg
gagctcatgctgcacgacatgttcggggacgactgtgtgaatttcaaagacggtaaaaac
ctgagcgtgacggtggacggagtcactgcgttcatcgacccagagaccagatctgtgacc
tgcacagaggacgagtctctgagggagatggtggaggtcgccatccaacgactctacgac
gctctcagccccgccttctccccgcgcccgctctgtgatgtcagcagcagcaacaccttg
tcatcagtgatgtag
DBGET
integrated database retrieval system
