Seriola lalandi dorsalis (Yellowtail amberjack): 111672947
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Entry
111672947 CDS
T06058
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03440
Homologous recombination
slal03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111672947 (palb2)
03460 Fanconi anemia pathway
111672947 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slal03400
]
111672947 (palb2)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
111672947 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
111672947 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
111672947
NCBI-ProteinID:
XP_023286309
LinkDB
All DBs
Position
Unknown
AA seq
1450 aa
AA seq
DB search
MESNVEEELKTTLHYDDKEKLRRKLVLLQREYLRTAQKLQRAERLEAVRSHVRSRITQQN
HQDQRDPEVTSNPCHNPSSLTVNTANASAQGVLQCQGQTEGLEDSDNFRRSQVIRFLLPS
DAACPQTPDPSHDSGRGHRPSPALRLRSRRSRLRWERRSAETGRITDSSQEGQEQSERGE
GATTEGEEEKTKSEGTEVVNENEEPFSASESESPSLLLTHWNTHANTETGDMEGKEMQGD
HEQRGKESELRAEGKNESDATSLLLSCTNSAIQTEERGQDCTLSEIGSETEGGDDGEKGR
GQREIMLCEQNSNKDEQNAAEKIENEKGHDNTTEIKEEKTGGLLDSCTLVEGLLFPVEYY
VRTTRRMTFSQSQPDMQAVILSQLSMGRHRRSRGRGRGRGRGRGLNRHTLTNECSDQHTE
TDFSSLTAASIDPYKSSHMRTVDASADLTGNSESSSEISNINSPSQTNVDVFSSPAVSTT
RPGRGRRRKRGRGRGRGRGRSQTPRSPLSLDTHQTVFEQTSDDNQPTSILVSSSPSLHGA
DGPKPCLAPGEPVLVPDDPQPVSTHSTATQPSSGVNGAECSAASGHVEKVYPIFLKSSGR
TNTSTQTSRSSSSWRSLLLPSSPPAQTILLPLPSLSPGLLVSNLMNFDIHQDFHLPDDQF
ASLKLHKLRQVALESGVEHFTAPSYNTRRSNRHSHPRYSTSDPVMPLPLPLSLTPTITDS
EQPAAGKQAATQSADFQNLMMNHKLASQSLAEEQSNRDITETPAEQQTENLHAKTHTSST
EPVSVVQERAADCVAQTEEQDTVSLNSHGESSVSACNTDTSIDHHIKPQPHMNFADRPAG
KVSHNVVGQSNELKQPASEKHTDCAGVVHPVEDHTDKAVITDLSFDCHLQETPEEPSNSC
TAVRTCNVIDAPGESPVKHPNVESPAKHPNESSEPTTCPPRDSSVENKNQNKSSPHHRVH
SQLLLSPPLATAPCSSHITPHLSSSAIFASPTLPSLGLTPHPVAAGLPLTSSPSAPPLTL
PPPHSPSTQALSPPALSPCPSIPSLPPSQPLVSSQNQAPSEPSDTADCVRHRVEPATCPT
ASSVQSQGTDRQVCPSTEETAEQHVIICAHTLKAPAGGCLVDTCCLPGPSGGLYVAAAGK
WAVCLWSQTSASDWSLIHTWTFNDPVINVFPVPDAAGLMFVTLGQLEIREVRLLSCSSLM
QVLLCEGVVQAVVGVSKSRVVTSSHSATGSTLQVFNMSDNSSMPSCQPLVSPGVCVGALA
PVDGLSDALIGTDEGGGVFVWNLKSGQLLRRIFLGDGFTHTACLRGYSYHGVLFVLLQHQ
LLSSLEEEEKEAIFSEQEKEEEKKKTALFSLVAVNPLSSKSVLATRLYPPKAWSGRLCEA
DVNRFGVVGLSQSGCVCVWELGRRGASRMVWAPESEGWQLARWGGRDMLVTGHHNGDVTL
HCYSLNSLCL
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggagagcaatgtggaggaagagctgaagactacactgcactatgatgacaaggagaag
ctacgcaggaagttggtacttttacaaagggaatatctcagaacagctcagaaactacag
cgtgctgagcgtttggaagcagtgcgtagccatgtgaggagcaggatcacacagcagaac
caccaggaccagagggacccagaggtgacatctaacccatgtcacaacccatcgtcattg
acagtgaacaccgccaatgcctcagcccaaggtgtactccagtgccagggacagactgag
ggtctcgaagattctgataacttcaggaggagtcaggtgatcaggttcctgctcccctct
gatgctgcctgcccgcaaaccccagatcccagccatgactcaggtagaggtcacagaccc
agtcctgccctgcgcctcaggtctcggcgcagccgcctgcggtgggaaaggaggagtgct
gagactggcaggatcacagacagcagtcaagaaggacaggagcagagtgaaaggggggag
ggtgctacaacagaaggagaggaggagaaaaccaagtctgagggaacagaggttgtgaat
gaaaatgaagaaccattttctgcctcagagtctgagtctccctctctgctgcttacacac
tggaacacacatgcaaacactgaaacaggagatatggagggaaaggagatgcaaggagat
catgaacaaaggggaaaagaaagtgagttgagagctgaagggaaaaatgaatcagatgca
acctctttgctgttgagttgtacaaactctgctatacagactgaagaaaggggacaagat
tgtacactgagtgaaataggaagtgagacagagggaggagacgatggtgagaaaggaaga
ggacagagagaaataatgctttgtgaacagaacagtaataaagatgagcaaaatgcagca
gagaaaattgaaaatgaaaaagggcatgataacaccacggaaataaaagaagaaaagact
gggggtctcttggactcctgtaccttagtggagggactgcttttcccagtggagtactat
gtccgaaccacaaggcgtatgacattctcacagagtcagcctgatatgcaggccgtcata
ttgtcccagctgagcatgggacgacatcgcaggagccggggccgtggccgtggccgtggc
cgtggcagaggattgaacaggcacacactcaccaatgaatgttcagatcaacacactgag
acagatttctcctccctgacagctgcatctatagatccttataaatcatcacacatgcgg
actgttgatgcatctgccgaccttactggcaacagtgagagctccagcgagatttcaaat
ataaactctcccagtcagactaatgtggatgttttttcatcccctgctgtcagcaccact
cgtccagggagaggaaggaggagaaaaagaggcaggggcaggggcagaggcagaggaaga
agccagaccccacggtcccctcttagtttagacacccatcaaacagtctttgaacaaacc
tcagatgataaccagcccaccagcatcctggtctcttcctccccgtctctccatggagct
gatggaccaaagccttgtctcgctcccggggaacctgttcttgtgccagatgatccccag
cctgtgtccacccacagcacagctacccagccttcctctggggttaatggagctgagtgc
agtgctgcctctggacatgtggagaaggtctatcccatctttctgaagagcagtggcagg
acaaacacatccacacagacgagcagaagttcatcgagctggcgatctctcctcttgcct
tcctctccacctgcacaaacaattcttcttcctctgccgtctctgtcccctggcctgctg
gtcagcaacttgatgaattttgacatccaccaagattttcatctccctgatgaccagttt
gcctccctgaagttacacaagcttcgccaagtcgctttggaatcaggagttgaacatttt
acagccccctcttataatactcgtagaagcaaccgccactctcaccctcgctacagcacc
agtgacccagtgatgccacttcctctcccactcagcctcacacccacgattacagattca
gagcagccagctgcaggaaaacaagctgctacacagtctgcagacttccaaaacttgatg
atgaaccacaagctcgcaagccagtccttagctgaagagcaatctaaccgagatattaca
gaaacccctgcagagcagcagactgaaaacctccatgcaaagactcacaccagctcaaca
gaacctgtgtctgtggttcaagagcgtgctgctgactgtgtagctcaaactgaagagcaa
gatactgtgagtttgaatagtcatggcgagagtagcgtctcagcctgcaatacagacacg
tccatagaccaccatatcaaacctcagcctcacatgaactttgcagacagacctgcaggc
aaagtgagtcataatgttgttggtcagtcaaatgaacttaaacagcctgcatcagaaaaa
cacacagactgtgctggtgtagtccatcctgtggaggaccacacagacaaagctgtcatc
acggatctttcctttgattgccatctacaggaaacacccgaggagccttctaacagctgc
accgctgtacggacgtgtaatgtcattgatgctccaggagagtctcctgtgaagcatccg
aatgtggaatctcctgccaaacatccaaacgaatcctctgaacccacaacttgtcctccc
agagacagttcagtggaaaataaaaatcagaataagtcttcaccgcaccacagagtccac
tctcagctcctgttgagccctcctctggccacagcaccgtgctccagccacataacccca
catctgtcctcctctgctatctttgccagccccacactaccctccctaggactcaccccc
caccctgttgctgccggccttcccctgacctcatctccctctgccccacctctcaccctg
cctcctcctcacagcccgtcaacccaggccctatctcccccggctctctctccctgtccg
tccatcccctccctccctcccagccagcctttggtctccagtcagaaccaggctccatca
gaaccgtcagatacagctgattgtgtgcgtcacagggttgaaccggctacctgtccaact
gcatccagcgtccaatcacagggcacggatcggcaggtgtgcccgagtacagaggagact
gcagagcaacacgtgatcatatgcgcacacacactgaaggccccagcaggaggctgtctg
gtggacacatgctgtctgcctgggccctcaggcggtttgtatgtagcagcagcagggaaa
tgggcagtgtgtctgtggagtcagacttcagcatccgattggagcttaatacacacctgg
accttcaatgacccagtgatcaatgtgtttcctgtcccggatgctgctgggctgatgttt
gtgactctgggtcagctggaaatcagagaagtgaggctgctgtcgtgctccagcctcatg
caagtgctgctatgtgagggggtcgtccaggctgttgtaggtgtgtccaagtccagagtg
gttacctcctcccactcagcaacaggttccaccctgcaggtgtttaacatgtcagacaac
agcagcatgccaagctgtcagcctcttgtgtctcctggtgtttgtgtcggggccctcgcg
ccagtggatggactttctgatgctctgattggcacagatgagggtggaggtgtcttcgtc
tggaatttaaagagtggacagctgctgcgtagaatcttcctgggagacggttttacacac
acggcctgtctcagaggatactcctatcatggagtgttatttgtcttgctgcagcatcag
ttgctcagctccctggaggaagaagaaaaagaggccatattttcagagcaggagaaagaa
gaggagaagaagaagaccgccttgttctccttggtcgccgttaaccctctgagtagcaaa
tctgtgctggctactcgactgtatccacccaaagcctggtccggcagactatgtgaagcc
gatgtcaataggttcggcgtggtcggtctgagtcagagcggctgtgtgtgtgtgtgggag
ctcgggcgtcggggggcctcgaggatggtgtgggctcctgagagcgaaggctggcagctg
gctcgctgggggggacgagacatgctggttactggccatcacaacggagatgttacttta
cactgctacagtctgaattcactctgcctctaa
DBGET
integrated database retrieval system
