Seriola lalandi dorsalis (Yellowtail amberjack): 111672980
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Entry
111672980 CDS
T06058
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
slal00536
]
111672980
Glycosaminoglycan binding proteins [BR:
slal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111672980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF6526
Motif
Other DBs
NCBI-GeneID:
111672980
NCBI-ProteinID:
XP_023286346
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MEQDRKWGDTGKPGEEWRSHGEQQQKKPPLWRNWRDLSGITICIVLSVLCLGVCILVFVR
TSELQSRIVSLEQQQRDAQLSAWRLSLEQVEPIILDRLDQILEEKLAVKLPKTREVREAP
HSCLCPPGPPGPPGRAGFPGDKGNMGIPGKMGLKGQAGVKGAPGEPGLSIIGPRGPPGQP
GTRGFPGFPGPIGLDGKPGQNGLKGDMGQRGPKGQPGEPGSKGEKGVCGDYTHRGLFAQD
LPLKTLAALRYNQAVMLKMLPITVRNMPSISPLILKRLKQGEPGAQGPPGPPGPPGLPGT
PGLNGASGSPGKPGEPGKPGKDLRLLPGLKGEPGVPGQKGDQGDVGPPGPDGPKGVKGDQ
GMKGDEGKWGFPGERGEKGEPGFPGTPGLKGQAGISGTPGIPGKRGYRGEKGEPSIAAQG
IKGEPGSLGLPGLMGPKGEKGDHGDKGEVGPEGPAGTRGPQGPTGEPGKAEIHNNENDIH
NIPLMGPPGLPGPPGSPGLTGAKGEVGLPGPPGLDGEKGPRGKPGEPGPAGPRGEDGVEG
FPGPKGDMGPAGSPGPKGESGEGARSEIIYGPSGPPGPPGPVGPAGSQGPSGPKGEPGIG
IRGEKGATGQKGEKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVPGPAGPKGDRGEKGDAG
LPGPTGPQGIPGLVGPQGVKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVP
GCWNKGQHPFQLAKK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggatcggaagtggggagacactggaaaaccgggtgaggagtggaggagccac
ggcgagcagcagcagaagaaaccgccgctttggagaaactggagagatttgtctggcata
acgatttgcatcgtactatctgtcctttgccttggagtttgcatcttggtttttgtgcgg
acctcggaattgcagtccaggattgtaagtctggagcagcagcagcgggacgcgcagctc
tccgcgtggaggttgtctctggagcaggtggagccaataatccttgaccgactggaccag
atcctggaggagaaacttgcagtaaaactaccgaagactcgggaggtgagggaagctccc
cacagttgcctctgtcccccaggacctccaggtccacctggacgagcaggctttccgggt
gacaaaggaaatatgggaattcctgggaaaatgggcttaaaaggacaagcaggggtgaag
ggagcaccaggcgagccaggtctgtctatcattggaccaagaggacctcctggccaacct
ggaacaagaggatttccaggctttccagggccaattgggttggatggcaagcctggacag
aatggactgaagggagacatgggtcagcgtggtcctaaaggacagccaggggaacctgga
tctaaaggggagaagggcgtctgtggagattacacacacaggggcctctttgcacaggat
cttccattgaaaaccctggccgccttgcgctacaatcaggctgtgatgttgaagatgttg
cccatcaccgtgcgaaacatgccctcaataagccctctaatcttaaaacgcctcaagcag
ggcgagcctggagcgcagggacccccgggacctccaggaccccctggactgccaggaaca
ccaggcttgaatggagccagtggctccccgggtaagcctggtgagccaggaaaaccagga
aaagacctacggcttttaccaggactcaagggtgagccaggtgtgccaggacaaaagggt
gatcaaggcgatgtaggaccaccaggtcctgatggcccaaagggagttaaaggtgaccaa
ggaatgaagggagatgaaggaaagtggggtttcccaggagagaggggagagaagggagaa
ccaggtttcccaggcactcctgggttaaagggccaggctggcatctctggtacccctggc
atccctggcaagaggggctacaggggtgagaagggagagccaagcattgctgcccaagga
ataaaaggagaaccaggttcattgggactgccaggcctaatggggcccaagggtgaaaaa
ggtgaccacggagacaagggggaagtaggtcccgaaggcccagctggaacaagaggtcct
cagggcccaactggggagccgggaaaggctgaaatccacaataatgaaaatgatattcac
aacatacccctgatgggtccccctggattacctggacctccagggtcccctggcctcact
ggtgcgaagggtgaagttggactaccaggtccaccaggactggacggtgagaaggggccc
agaggaaagcctggagagcctggccctgcaggtcccagaggggaggacggtgtcgaaggc
ttcccaggacccaagggggacatgggtccagctggatcacctggtcctaaaggcgaatct
ggagaaggagctaggtcagaaataatctatggtccttcagggcccccaggacctccagga
ccagttggcccagcaggatctcaaggaccttcagggcctaagggagagccaggcataggc
atcagaggagaaaagggagcaacaggtcagaagggcgaaaagggagacagaggccatctt
ggactccctggggctcatgggttagatggcagaccaggcccagtgggtctaataggacca
gcaggtgtgccagggccagcaggaccaaagggagacagaggtgaaaagggagatgcagga
ttaccaggaccaactgggcctcaaggcatccctggtttagtaggaccacaaggagtcaaa
gggaacaggggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagac
caaggagcacctggattagatgccccctgtcctttgggggacgatggcttacctgtacca
ggatgttggaataaaggtcaacatcctttccaactggccaagaagtag
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