Seriola lalandi dorsalis (Yellowtail amberjack): 111673209
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Entry
111673209 CDS
T06058
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
111673209 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slal03400
]
111673209 (lig3)
Enzymes [BR:
slal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111673209 (lig3)
DNA repair and recombination proteins [BR:
slal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
111673209 (lig3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
111673209
NCBI-ProteinID:
XP_023286659
Ensembl:
ENSSLDG00000002837
UniProt:
A0A3B4WGM2
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MQRSLIFLAPRIVCAGLQTPRTLVGCQQLFKVCRSSPVSSCFEHQPSPIYVFNFPREICN
FSSVSHKHSFLQKCSPWLSLHQYFSNEPDMAEQRFIVEYAKRGTAGCKKCKDKIQKGIVR
IGKIVPNPFSESAGEMKEWYHMKCIFEKLERARATTKKIEDITDLEGWEELQDEDKDLIN
KHVSDLMAKVNASPKKKVQAKMNTTGQLMAPPADPSVNAPRKFSGFTAAKAGTSSSSGPS
TPSPAKASQGSPLSTQLCDPQHKDCLFREFRKLCAMVAENNSYNVKTQIIEKYLKKGSGG
DKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRCDQDDMVRDLEQGDVSETVRM
FFDESKAFPPAAKSLLTIQEVDASLTRLAQLTKEDEQQTELEDIAKKCTSNDLKCIIRLI
KHDLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTVEAS
LMTPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDNFSYFSRSLKPVLPH
KVAHFKDYIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAKVCLFVFD
CIYFNGVSLMERPLRERRKFLHDNMVEVTNRILFSEMKHVTRAGDLADMITRVIREGLEG
LVLKDIKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCY
DPDSKKWCTVTKCSGGYDDATLARLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRDP
EQAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLHQLKELYRISKENC
DFKVTAGPSTSNDDKGSSGGDSGGNSPSPSSQRGAPPKKASNSTPPKPKAVKSQPRTPAS
EAPAPKKVKKSESVHSNGQQNKTKATSQLLQPRNDETLMDIFSGVKLFMPISVQDFDKLR
RYFVAYDGDLVLDYDTASATHTLAEPGEDSQAQRVTPSWIWECIRKRRVVPPC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcagagatctcttatttttttagctcccaggattgtctgcgcaggactacaaactcct
agaacacttgtcgggtgtcagcaactcttcaaagtgtgtagatcctctcctgtctcttca
tgttttgaacatcaaccttcacccatttatgtgtttaattttcccagggaaatctgtaat
ttttcctcagtatcccataaacacagcttcctccaaaagtgttctccctggctttccctg
catcagtatttctccaacgagccagatatggcagaacagaggttcattgtggaatacgcc
aaacgtggtactgcaggttgtaagaaatgcaaggacaaaatccagaagggcatagtgcgt
atagggaagattgtgccaaaccctttcagtgagtctgcaggagagatgaaagagtggtat
cacatgaagtgtatttttgagaagctggaaagggcgagagccaccacgaagaagattgag
gacatcacagacctggagggctgggaggagctgcaggatgaagacaaggacctcattaat
aaacacgtttcagacctgatggccaaggtcaatgcaagtccgaagaagaaggtgcaggcc
aagatgaacaccactggccagctgatggctcctcccgctgacccgtccgtcaacgctcca
cgcaagttttcaggcttcactgctgcgaaggccggcacctccagcagctcaggaccatca
accccttcccctgccaaagccagccaaggcagccccctgtccacccagctctgtgacccc
cagcacaaggactgcctcttcagagagtttcgcaagctttgtgccatggtggcagaaaac
aacagctacaatgtcaagacacaaattattgagaagtatctcaagaaaggctcaggtgga
gataagttccatggagatctttacctgacagtgaaactgctgttgccgggcgttgtaaaa
agtgtctacaacctcaatgacaagcagatcgtaaaactcttcagtcgcatattcagatgc
gaccaggatgacatggtgcgcgatctggagcagggtgatgtatctgagacagtgaggatg
ttcttcgatgagagcaaagcatttcctccagctgccaagagcctgctgaccatccaggaa
gtggacgcatccctgacccgcctcgcccagctgaccaaggaggatgaacagcagaccgag
ctggaggatattgccaaaaaatgcaccagtaatgacctgaaatgcatcattcgacttatt
aagcatgacttgaagatgaactccggagcaaaacacgtcttggatgctgtggatccaaac
gcttatgatgccttcaaagcctcgcgtaatctgggtgatgtgattgagcgagtgttgagg
aatcagcaggaggcgtccaatggttcagggcccaggaagctcctcactgtggaggcctct
ctcatgacccccgttcagcccatgttggcagaagcgtgtaaatccatagagtacgccatg
aagaaatgtcccaacgggatgtactctgagatcaagtacgatggagaacgagtgcaggtc
cataagaacggagacaacttcagctacttcagccgcagcctcaagccggtgttaccgcac
aaagtggcccatttcaaagactacatccctcaggcttttcccggcggccacagtatgata
ttggatgctgaagtcctcctaattgacacaaagaccagtaaacccctgccttttgggacc
ctgggtgtacacaagaaagcagcgtttcaagatgccaaagtgtgcctttttgttttcgac
tgtatctacttcaatggcgtgagtctcatggagaggccgctgcgtgaacgcaggaagttc
ctacatgacaacatggtggaagttaccaacaggatcctgttctcagagatgaagcatgtc
actagggcgggagacctggctgatatgataactcgtgtcatcagagagggacttgaaggc
ctggtgctaaaagacataaagggcacctatgaaccaggaaagcgccactggctgaaggtg
aagaaggactatttgaacgaaggcgcgatggcagacacggctgatctggtggtgctgggg
gccttctatggaaaaggctcaaacgggggcatcatgtccagtttcctaatgggctgttac
gacccggactcaaagaaatggtgcacagtcaccaagtgctctggaggctacgatgacgcc
accctggccaggctccagaaggagctggatgtgatcaaaatcagcaaggaaccaagcaaa
atcccaggctggttgaaaatcatcaagaactattatccagatttcattatccgtgatcct
gagcaagcacctgtctgggagatcacaggcgccgagttctccaaatcagaaatgcacaca
gccgatggcatctctatccgctttccccgcatgacacgcatccgtgatgacaaggactgg
aagagtgccaccaacttgcaccagcttaaagagctgtatcgcatatcaaaggagaactgt
gactttaaagtgacagctggaccgtctacatccaacgatgacaagggctcatcaggaggg
gacagcggaggaaactcgccatcgccctcgtcccagcgaggcgcccctcccaagaaagcc
agcaacagcacgccgcccaaaccaaaggcggtgaaatcccagcctcgcactccagcctca
gaagcacccgctcccaagaaggtgaagaagagcgaaagtgttcacagcaacggacaacaa
aacaaaacgaaggcaacttctcaactgctgcagccaaggaatgacgagactctgatggac
atcttcagcggggtgaagctcttcatgcccatctcagtgcaggactttgacaagctgagg
cggtactttgtggcgtatgacggagacctcgtcctggactacgacaccgcctcagccaca
cacactctggctgaacctggagaagacagccaggcccagagagtcacacccagctggatc
tgggaatgtatccgcaagaggcgcgtcgtacctccctgttaa
DBGET
integrated database retrieval system
