Seriola lalandi dorsalis (Yellowtail amberjack): 111673301
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Entry
111673301 CDS
T06058
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
slal
Seriola lalandi dorsalis (Yellowtail amberjack)
Pathway
slal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111673301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slal03019
]
111673301
03012 Translation factors [BR:
slal03012
]
111673301
Enzymes [BR:
slal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111673301
Messenger RNA biogenesis [BR:
slal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111673301
Translation factors [BR:
slal03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111673301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
AAA_22
nSTAND3
AAA_19
ATPase
NPHP3_N
NB-ARC
PhoH
AAA_14
NACHT
HerA_C
AAA_16
Motif
Other DBs
NCBI-GeneID:
111673301
NCBI-ProteinID:
XP_023286810
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MSYGYGGGGGRRGRRGGRGQRDGSRERWDRGGGFRGHSSDFDQDRGGGGGGGGGGGGGGG
QRDRPPPHLKGREIGLWYARYGAVRRKQADRRSRAVVQMDEAREQHITKLLNSVQNDQSG
PERDGRNVRASTSDSWRTETNRSGHCYFDGDRPEEDKLKTEIKSEEEEEEVSLAVAKDEP
PDTWEEEEPQEEEKEKFRRKDRDLEFLFQEVVRDSSLDDYLKRDLQSKQSDPKYKEMLKF
REKLPSYSKKEELVELINSNRVLVVSGETGCGKTTQVTQFILDDYINRGIGSMCRVVCTQ
PRRISAISVAERVAAERAESVGNVNSCGYQIRLQSRLPRRQGSVLYCTTGIILQWLRSDP
LLSSISHLVLDEIHERNLQSDVLLVIVKDLLNLRDDLKVILMSATLNAEKFSKYFDKCPM
IHIPGLTFPVEEFLLEDIVEMTRYRPQNQDRRPSWKRGFWQGRHSRPEKEEKEAEYKDSW
PCYARTLQHRYSDNTIAALEMLDNDEKIDLELILALIRHIVLNEEEGAILVFLPGWDNIS
SLNDLLTAQQMFRS
NT seq
1663 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggatatggcggcggaggtggaagaagaggcagaagaggaggtcgagggcag
agagatggcagcagagaaaggtgggacagaggagggggtttcagaggacatagttccgac
tttgaccaggaccgaggaggaggaggagggggaggaggaggaggaggaggaggaggtgga
caacgggaccgtcctcctccacacctgaagggccgtgagattggtctgtggtacgcaaga
tacggggccgtgaggaggaaacaggctgaccggagatcgcgggcagtggtccagatggat
gaggccagagagcagcacattaccaagctgcttaactctgtccagaatgaccagtctggt
ccagagagagacggcaggaatgtaagagcctctacgtctgacagctggcggacagaaacc
aatagaagtggtcattgttactttgatggggataggcctgaagaagataaactgaagact
gagatcaaatctgaggaagaggaggaagaagttagtttagcagtcgctaaagatgaacct
ccagacacgtgggaagaagaagagccacaggaggaggagaaagagaagtttaggaggaaa
gacagagatctggagttcttatttcaggaagtggtcagagatagttcactggacgactac
ttaaagagagatctgcagagcaagcagtccgatccgaagtacaaagaaatgctgaaattc
cgtgaaaaactaccatcttatagcaaaaaagaggagttggtagagctgatcaactctaac
cgtgtcctcgttgtgagtggggagacaggctgtggaaagaccactcaggtcacccaattc
atcctagatgactatatcaatagaggcattggctcaatgtgccgggtggtctgcacgcag
ccacgtcgcatcagtgccatctcggtagcggaacgtgtagcagcagagagggcagaaagt
gtaggcaatgtaaattcttgtggttaccaaatccgcctacagagccggttaccacggaga
caaggttcggtcctgtactgtacaacgggcattattcttcagtggcttcgctcagaccca
ttgttgtccagcatcagtcacctggtattggacgagatacacgagaggaacctgcaatca
gatgttttgctagttattgtgaaggacctactcaacctccgggacgatctcaaggtcatc
ctcatgagtgccacactcaatgctgagaagttttctaaatattttgacaagtgtccaatg
atccatatccctggtttgacgttcccagtggaagagttcctattggaggacattgtagag
atgaccaggtatcgtccccagaatcaggaccgtcgcccctcatggaagagaggcttttgg
cagggccgccactccagacctgagaaggaggagaaagaggctgaatacaaggacagctgg
ccttgttatgcacgtacattgcagcacagatattctgacaacactattgcggcactggag
atgttggacaatgatgagaagattgacctggagctgatcctggcactgatccgtcatatt
gtgctcaatgaggaggaaggagcaatcctggtgttcctccctggctgggacaacatcagc
agtctcaatgacctgctcacagctcagcagatgttccgatcag
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