Sphingomonas lacunae: GV829_06620
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Entry
GV829_06620 CDS
T07071
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slan
Sphingomonas lacunae
Pathway
slan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GV829_06620 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slan03019
]
GV829_06620 (recQ)
03400 DNA repair and recombination proteins [BR:
slan03400
]
GV829_06620 (recQ)
Enzymes [BR:
slan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GV829_06620 (recQ)
Messenger RNA biogenesis [BR:
slan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GV829_06620 (recQ)
DNA repair and recombination proteins [BR:
slan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GV829_06620 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJQ32168
UniProt:
A0A6M4ASU2
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All DBs
Position
1396952..1398742
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AA seq
596 aa
AA seq
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MTIAQTGVADPHETLHRVFGFPAFRGMQQAVVDRVLAGRHTLAVMPTGAGKSLTYQLPAV
TLPGTVVVISPLIALMHDQLRSAEAVGIRAATLTSVDTNRAETVDRLLAGELDLLYVAPE
RASQPGFRDLIAQVQLALFAIDEAHCVSEWGHDFRPDYRLLRPLLDHFPDTPRLALTATA
DAHTRADVLTQLGIAQDGLIVAGFDRPNIQYTIHPRQGMTQQIADVVARIPGPGIIYAQT
RDGTERLAASLARSGRPVRIYHAGLTPEQRAANQAAFVASEDMVMVATIAFGMGIDKPDV
RFVAHAGLPKSIEAYYQETGRAGRDGDPSEAIMFWGAEDFSRARQRLSEVPEERRAGDRA
RLNALAALVESPGCRRAILLRHFGESPPAECGNCDNCLNPPQRIDASVLAQKLLSAVYRT
GQNYGIGHIVNVLTGADDARVRDRGHDRLSVHGIVNAAEAPLLRPLVRTLMAQDVLAETE
HKGLAFGPAARPVLKGEAPVLLAIQPKRERRRRGSAAGATPNPVGNPLFEALRARRRELA
EEIGVPPYVIFHDSVLRDMAGLKPQTLSALGELPGVGARKLEAYGDAFLTVIRQAG
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgacgatagcccaaaccggcgttgccgatccccatgaaacattgcaccgcgtctttggt
ttccccgcctttcgcgggatgcagcaggctgtggtcgaccgcgtgctcgccgggcggcat
acgctcgctgtcatgccgacgggcgcgggcaagtcgctgacctatcagttgccggcagtc
accttgcccggcaccgtcgtcgtcatctcgccgctgatcgcgctgatgcatgatcagttg
cgcagcgctgaagcggtcggcatccgcgccgccacattgaccagtgtcgataccaaccgg
gcggagacggtcgaccggctgctcgcgggggagcttgacttgctctacgttgcgcccgaa
cgcgcctcgcaacccggcttccgcgatctcatcgcccaggtgcaactcgccctgttcgcc
attgatgaggcgcattgcgtcagcgaatgggggcatgatttccggcccgattaccgcctg
ttgcggccgctgctcgatcatttccccgacacgccgcgcctcgcactgacggcaacggcg
gatgcgcacacccgcgccgatgtgctgacccagctcggcatagcgcaggacggcctgatc
gtagccgggtttgatcgacccaacatccaatacactatccatccccgtcaggggatgacc
cagcagattgccgatgtcgtcgcccgcattcccggccccggcatcatctatgcccagacc
cgcgatggcaccgaacggcttgcggcctcgctcgcccgctcgggccgcccggtgcgcatc
taccacgccggccttaccccggaacagcgtgccgccaatcaggctgcctttgttgcctcc
gaagacatggtgatggtcgccaccatcgcctttggcatgggcatcgacaagcccgacgtg
cgctttgtcgcccatgccggcctgcccaaatcgatcgaggcctattatcaggaaaccggg
cgcgcggggcgggacggtgatccgtcagaggccatcatgttctggggcgcggaggatttc
tcccgcgcccggcagcgcctttccgaagtgccggaggaacgccgcgccggggaccgggca
aggctcaacgccctcgccgcgctggtggaatcgcccggctgccgtcgcgccatcctgctc
cgccactttggcgaaagcccgcccgctgagtgcggcaactgcgacaattgcctcaaccct
ccgcaacgcatcgacgcctcggtcctggcacaaaagctgctgtccgccgtctatcgcacg
ggtcaaaattacggcatcggccacatcgtcaatgttttgaccggcgccgatgatgccagg
gtgcgggatcgtggccatgaccgcctctcggtccatggcattgtcaacgccgcggaggca
ccgctgctccgcccccttgtccgcaccctgatggcacaggatgtgctggccgaaaccgag
cataagggcttggcattcgggcctgccgcccgaccggtgctaaagggggaggcacccgtt
ctgctggcgatccagcccaaacgcgaacggcgccgtcgcggcagcgcggcgggcgccacg
cccaatccggtcggcaatccgctgttcgaggccttgcgcgcccgccgccgcgagctggct
gaggagattggggtgccaccctatgtcatcttccacgacagcgtgttgcgcgacatggcc
ggcctcaagccgcagaccctctccgccttgggcgaactcccgggcgttggcgcgcgcaag
ctggaggcctatggcgacgccttcctgacggtcatacggcaggccggctga
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