Sphingomonas lacunae: GV829_06795
Help
Entry
GV829_06795 CDS
T07071
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slan
Sphingomonas lacunae
Pathway
slan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GV829_06795 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slan03021
]
GV829_06795 (rpoC)
03400 DNA repair and recombination proteins [BR:
slan03400
]
GV829_06795 (rpoC)
Enzymes [BR:
slan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GV829_06795 (rpoC)
Transcription machinery [BR:
slan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GV829_06795 (rpoC)
DNA repair and recombination proteins [BR:
slan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GV829_06795 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QJQ32198
UniProt:
A0A6M4ASX0
LinkDB
All DBs
Position
1432349..1436641
Genome browser
AA seq
1430 aa
AA seq
DB search
MNQITNFMNPVAKPETFDQIKIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEQYIVLEPGLTPLEKMQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRVLLENLDLEGERLALMEELATTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
QVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERREVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEREGEPGEGMLLADMAEVHHALDA
GAVTLHSKVITRVPQTDEAGQTYLKRFETTPGRMLIGECLPKSHKVPFEIVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMIIPDAKIEMVDETKALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIKATPKGDDGRLAPINSVYMM
AHSGARGSQTQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCTIVEDDCGTERHLEMRAIVQGGSTIASLGERILGRTLA
EDIVDAKTGDVVAPAGLLLEEHHIAAIEALGIQSAQIRSPLVCESKTGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSHLEALADGTIQYRDMPTI
TDSRGRRLSLARGGELAMIDNEGRERAVHKLPYGANILVEDGATVAQGDRIAEWDPFTMP
VITEQPGVVRYQDLLDGKTLTEVVDEATGIAQRVVIEYRASGRGKKEDLQPRLTLLDEAS
GEAARYLLASGTTISVEDGQTVEAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
SVIAKISGRIEFLKDYKAKRKFAIVPEEGDPVEYLLSKSKRIEVQEGDFVKKGDTIVSGS
PDPHDILEVMGIEALAAYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITVGGDTTL
LPGEQVDREEMDEINSRLAKGQRPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTEA
SVQGKVDTLMGLKENVIVGRLIPAGTGAAMNRIRVTASSRDAALRASMRAANEAHLVAPD
TAAEEHAAELAQGPEAAIGDDPLAAVEGPTHGTDADAGDYLNPEAADGEE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagatcaccaacttcatgaacccggtcgccaagccggagacgtttgaccagatc
aagatcggcatcgcctcacctgaccgtatccgcagctggtctttcggcgagatcaagaag
cccgaaacgatcaattaccgcacgttcaagcccgaacgtgacggcctgttctgcgctcgc
atttttggtccgatcaaggattatgagtgcctgtgcggcaagtacaagcggatgaagtat
aagggcatcgtctgcgaaaagtgcggtgtcgaagtcaccgtgaccaaggtgcgccgtgag
cgcatgggccatatcgaactggccgcgccggttgcgcacatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgcttgacatgcagctcaagcaactcgagcgcgtcctctat
ttcgagcagtatatcgttcttgagccgggcctgaccccactcgaaaagatgcagttgctg
accgaagacgagttgctcgacgcgcaggatgaatatggcgaagacgctttctcggccggc
atcggcgccgaggcgatccgcgtgctgctcgaaaatctcgatctcgagggcgaacggctg
gcgctgatggaagagttggcgacgaccaagtcggagctcaagcccaagaagatcatcaag
cgtctgaaggttgtcgagagcttcattgaatcgggcaaccgccccgaatggatgatcctc
caggttgtgccggtcattccgcccgaactgcgcccgcttgtgccactcgacggtggccgc
ttcgcgacgtcggatctgaacgatctctaccgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggaactgcgcgcgccggacattatcgtccgcaacgaaaagcgcatgctg
caggaagccgttgacgccctgttcgacaatggccgccgtggccgtgtgatcaccggcgcc
aacaagcgcccgctgaagtcgctgtctgacatgctcaagggcaagcagggccgtttccgc
cagaacctgctcggcaaacgcgtcgactattcgggccgttcggtcatcgtcaccggtcct
gagctcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgtctcgatgccaagggtctttctatgaccctgaagcaggcgaagaag
tgggttgaaaaggaacgccgagaagtctgggacatcctcgatgaggtgatccgcgagcat
ccggtcatgctcaaccgcgccccgacgctgcaccgtctcggcatccaggctttcgagccg
gtgctgatcgaaggcaaggcgatccagctgcacccgcttgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctcgaa
gcccgcgtgttgatgatgtcgaccaacaacatcctgtcaccggccaacggcaagccgatc
atcgttccgtcgcaggacatggttctgggtctctattatctcagcctcgagcgtgagggt
gagcccggtgaaggcatgctgctcgccgacatggccgaagtgcatcatgcgctcgacgcc
ggcgcggttacgctgcacagcaaggtcatcacccgcgtgccgcagaccgacgaagcgggt
cagacctatctgaagcgctttgaaacgacgccgggccgcatgctgatcggcgaatgcctg
cccaagtcgcacaaggtgccgttcgaaatcgtcaaccgccttctcaccaagaaggaaatc
ggtgacgtcatcgatcaggtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttcaaggccggcatctcgttcggcaag
gacgacatgatcatccccgacgccaagattgaaatggtcgatgagaccaaggcgctggtg
aaggattatgaacagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggtgaccaggtcgccaacgccatgatggacgagatc
aaggcgacgccgaagggcgacgacggccgtctcgcgccgatcaactcggtgtatatgatg
gcgcactccggtgcccgtggttcgcagacccagatgaagcagctcgccggcatgcgcggc
ctgatggccaagccgtcgggtgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggtctgaccgttcttgaatatttcaactcgacccacggcgcccgcaagggcttggccgac
accgcactcaagacggcgaactcgggttacctcacccgccgtctggtcgatgtcagccag
gattgcaccatcgtcgaggatgattgcggcaccgaacgccatctggaaatgcgcgccatc
gtccagggtggttcgaccatcgcctcgctgggtgagcgtatcctcggccgcacgctggcg
gaagacattgtcgatgccaagacgggcgacgtagtggcacctgctggactactgctcgaa
gagcatcacatcgccgcgattgaagcgttgggcatccagtcggcccagatccgttcgccg
ctggtgtgcgaaagcaagaccggcgtctgcggcaagtgctacgggcgtgacctcgcccgt
ggtacgccggtgaacatcggtgaagcggtcggcgtcatcgccgcccagtcgatcggtgaa
cccggaacgcagctgaccatgcgtaccttccacatcggtggtgcggcccagctcaacgaa
cagtcgcacctcgaagcgctcgccgatggcacgatccagtatcgcgacatgccgacgatc
actgactcgcgcggtcgccgcctcagcctcgcccgtggtggcgagctggcgatgatcgac
aatgagggccgtgaacgcgccgtccacaagctgccctatggtgccaacatcctcgtggag
gatggtgccacggtggcccagggcgaccggattgccgaatgggatccgttcaccatgccg
gtgatcaccgaacagcctggtgtggtgcgttatcaggatctgcttgacggcaagaccctg
accgaagtggtcgacgaagcaacgggtatcgcccagcgcgtggtcatcgaatatcgcgcg
tcgggtcgtggcaagaaggaagacctgcagccgcgtctgaccctgctcgacgaagcgtcc
ggtgaggcggcacgctatctgttggcttcgggcacaaccatctcggtcgaggacggccag
acggtggaagccggtgacgtgctggcccgtgtcagccgtgaagccgccaagacccgtgac
attaccggtggtctgccgcgcgttgccgaactgttcgaagcccgcaagcccaaggacaat
tcggtgatcgccaagatcagtggccgtatcgaattcctcaaggactataaggcgaagcgc
aaattcgcgatcgtccccgaggaaggcgatccggtcgaatatctgttgtccaagtcgaag
cggatcgaagtgcaggaaggtgacttcgtcaagaagggcgacaccatcgtttctggttcg
cctgacccgcacgatattctggaagtgatgggcattgaggcgctcgccgcctatctcgtc
tccgaaatccaggaagtctatcgcttgcagggtgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcaaaaggtcgagatcactgtgggtggcgacaccaccctg
ctcccgggcgagcaggttgaccgtgaggaaatggacgagatcaacagccgtctggcaaag
ggtcagcgtccggccgaaggcaagccggtgctgctcggcattaccaaggcgagcctgcag
acccggtcgttcatctcggccgcgtccttccaggaaacgactcgtgtcctcaccgaagcc
tcggtgcagggcaaggtcgatacgctgatgggtctcaaggagaatgtcatcgtcggccgt
ctcatccccgccggtaccggtgcggcgatgaaccgtatccgcgtgaccgcatcgtcgcgt
gacgcggcactgcgcgcatcaatgcgggcggccaatgaggcacatcttgttgcccctgac
acggcggcggaagagcatgcggctgaactggcacagggcccggaagctgcgattggcgat
gatccgctggctgcggtcgaaggtccgacccacggcaccgatgctgatgccggtgactat
ctgaacccggaagcggctgacggcgaggaataa
DBGET
integrated database retrieval system
