Sphingomonas lacunae: GV829_06995
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Entry
GV829_06995 CDS
T07071
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slan
Sphingomonas lacunae
Pathway
slan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GV829_06995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slan03019
]
GV829_06995
03009 Ribosome biogenesis [BR:
slan03009
]
GV829_06995
Enzymes [BR:
slan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GV829_06995
Messenger RNA biogenesis [BR:
slan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GV829_06995
Ribosome biogenesis [BR:
slan03009
]
Prokaryotic type
rRNA processing factors
GV829_06995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QJQ33623
UniProt:
A0A6M4AWY7
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All DBs
Position
1477230..1480022
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AA seq
930 aa
AA seq
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MLIDARHREETRVAVIKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVEYGGN
RHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAAEAAMRAEDEVESLEGEIEDIQPPAP
LDEDGYADEDEDQDHSADHEDGHDDGEESREDGDDEGARSGDGRGRERGRRGRRRGGRSD
RERSDRDEAVDFRRSLHRRYKIQDVIRRRQVLLVQVVKEERGSKGAALTTYLSLAGRYCV
LMPNSSHGGGISRKISNGADRKRLKTIIDELGLPPSMGCIVRTAGLERTKTEIKRDFDYL
ARLWDEIRERTLKSAAPALIHSDSDLIKRAIRDIYNSGIEEVSVEGDEGYRAAKDFMKLL
MPSHARRVKQYADPVPLFQRYGVEDQLGAMYQPVVPLKSGGYLVINPTEALVSIDINSGR
STREHNIEQTAVSTNLEAAYEIARQLRLRDMAGLVVIDFIDMEVGGNVRKVERAMRDALK
NDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRACPHCEGTGLVRTASSAGLSALRLLE
EEAARGRGSRLVLRASQEAAFYVLNNKRAELSEIEQRYGVSIEVQSDGQTEGARMTVDVS
GPPPANLPRFAPIIDEDEEEDLPLDADDEGDGDGEEQRESRGERERGEGREGSRRRRGRR
RRGRRDAEGREGEPQRERDAEQDEDREAGEVDEADQAASGEAGDERPARDEGEGGRRRRR
GRRGGRGRRGDRGEDRGETVLAEAGEEVDQQTAADMVEPVADAEPATDEVPAAKPKRASR
SRKKVTEPVAEAAVEEQAEASEAVSSESTDVADAAPAKPKRASRSRKKAEPEAVAEASAP
VEVDADAPIAEAPVKPKRASRSRKAAAADVAAEASLSAEIAASDTVTAADSGASEMVSIE
TVAPSAEDGKNEASEGGERRRGWWQRTFGS
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcgacgcgcggcaccgggaagagacccgtgtcgccgtcatcaagggaaaccga
atcgaggaatttgatttcgagtccgcagagcacaagcagctcaagggcaatatttatctg
gccaaggtgacgagggtcgagccttctctgcaggcggcgttcgtcgaatatggcggcaac
cgccatggctttctggccttcagcgaaatccaccccgactattaccagattcccaaggag
gaccgtgaggccctgttgagggaagaggctgaacatgcggctgccgaggctgcgatgcgg
gccgaggatgaagttgaatcgcttgagggcgaaattgaggacatccagccgccggcgccg
ctcgatgaagacggctatgccgatgaggacgaagatcaggaccattcagctgaccatgag
gatggtcatgatgatggcgaggaatcgcgtgaggacggcgatgatgagggcgcccgttcc
ggcgacggccgtggccgtgagcggggtcgtcgtggccgccgtcgtggcgggcgcagtgat
cgtgaacgcagcgaccgtgacgaagctgtcgatttccgccggtcattgcatcgccgttac
aaaattcaggacgtcatccgccgtcggcaggtgctgctggtccaggtggtcaaggaagag
cgcgggtccaagggtgcggctctgaccacctatctgagcctggccggccgctattgcgtc
ttgatgccgaattcgagccatggcggcggcatcagccgcaagatttccaatggcgccgat
cgcaagcgactcaagacaatcatcgacgagcttggcttgccgccgtcgatgggctgcatt
gtccgtactgctggccttgaacgcacgaagaccgagatcaagcgcgatttcgactatctc
gcccggctgtgggacgagatacgcgagcgcacgctcaaaagtgcagcccccgccctgatc
cattctgacagtgacctgatcaagcgcgcgatccgcgacatttacaatagcggcatcgag
gaagtgtcggtcgagggcgatgaaggctatcgcgcggccaaggatttcatgaagttgctg
atgccgagccatgcacggcgggtgaagcaatatgccgacccggtgccgctgttccagcga
tatggcgtcgaggatcagcttggtgccatgtatcagccagtcgtgccgctgaagtccggt
ggctatctggttatcaacccgaccgaggcgctggtgtcgatcgacatcaactcggggcgg
tcgacgcgcgagcacaatatcgagcagacagcggtcagcaccaacctggaagcggcctat
gagatagcgcgccagctgcgcttgcgcgacatggccggtctggtggtcatcgacttcatc
gacatggaagtcggcgggaacgtccgcaaagtcgaacgggcgatgcgcgatgcactgaag
aacgaccgtgcccgcatccaggtgggtcgcatttccggctttggcctgatggaaatgagc
cgccagcggctgcgcaccggtgttctggaagcatcgacgcgtgcctgcccacattgcgag
ggcacgggcctggtccgcacggcttcgtccgccggtctgtcggctttgcgcctgctggag
gaagaggcagcgcggggtcgcggctcgcgtcttgtgctgcgcgccagccaggaagcggcc
ttttatgtgctgaacaacaagcgggccgaactgtccgaaattgagcagcgttatggcgtg
agcatcgaggtccagtccgatggccagactgaaggggcgcggatgacggtggacgtcagc
gggccgccgcctgccaatttgccacgatttgccccgatcatcgatgaggatgaagaggaa
gacctgcccctcgacgccgatgatgagggtgatggcgatggcgaggagcagcgcgaatca
cgtggtgagcgtgagcggggcgagggtcgcgaaggcagtcgccgtcgccgcggtcgtcgt
cggcgcggtcgccgggatgccgaaggccgcgagggtgaaccccagcgtgagcgtgatgcc
gagcaggatgaggatcgcgaagcgggtgaagtcgatgaggccgatcaggccgcatcgggt
gaggccggtgacgagcggccagcgcgcgatgaaggtgaaggcggccgtcgccgccgtcgc
ggacgccgcggcgggcgtggacgtcgcggtgaccggggcgaagaccgcggtgagaccgtg
ctcgccgaagcaggggaagaggttgaccagcagacagcagctgacatggtggagccggtt
gccgatgccgaacccgcgacggacgaagtccccgccgccaagccaaagcgcgcatcgcgc
agccgcaagaaggtgaccgaaccggtcgccgaggcagctgttgaggaacaggctgaagcc
agcgaagcggtgagcagcgaatcgaccgacgttgccgacgccgcacccgccaagcccaag
cgagcgagccgcagccgcaagaaggcggaaccggaagcggttgccgaggcaagcgcaccg
gtcgaggtcgacgcggatgctccgatcgccgaggcgccggtcaagcccaagcgggcaagc
cgcagccgcaaggccgcagcagccgatgtggccgccgaggcaagcctttccgccgagatc
gctgcaagcgataccgttacggcagccgatagtggagcgagtgagatggtttcaattgaa
actgttgcgccatcggcggaagatggcaagaatgaggcttccgagggcggcgagcgccgc
cgcggttggtggcagcgaacctttggttcctga
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