Sphingomonas lacunae: GV829_09925
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Entry
GV829_09925 CDS
T07071
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
slan
Sphingomonas lacunae
Brite
KEGG Orthology (KO) [BR:
slan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slan03019
]
GV829_09925 (hrpB)
Enzymes [BR:
slan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GV829_09925 (hrpB)
Messenger RNA biogenesis [BR:
slan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GV829_09925 (hrpB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_30
CON_HrpB
ScmC
AAA_19
Cas3-like_C_2
WHD_HA2
DUF8055
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QJQ32720
UniProt:
A0A6M4AWH8
LinkDB
All DBs
Position
2068483..2070942
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AA seq
819 aa
AA seq
DB search
MTLPIHAVLADLLAALQDGSNAVLIAPPGAGKTTAVAPALLDQPWCDGQVLLLSPRRIAA
RAAAERIAEMGRETVGRTIGYATRMDARHGPETRVLVLTEGIFRNRIIADPELSGVSAVL
FDEVHERSLDSDFGLALALEAQAAFRPDLRLVAMSATLDGERFAALMGDAPTIASEGRSH
PLTLRHIGRDATLRIEDDMARAVRRVLSDEPAGDILAFLPGVREIERTAECLEGLSLAIL
PLHGQLDPAQQRAALRPDPQGRRKLVLATSIAETSLTIDGIRIVIDSGLARRARFDIAAG
TSRLVTERASQAAATQRAGRAARQGAGVAYRLWEEAATGGMARFDPPEISDTDLAPLLLD
CAAWGESDPQRLAWLDPPPAPALAEARSRLTRMGALDAGGGLTEHGHSIAGLPLPPAIAH
MVIAGAETGQAALAAELAMLLSERGLGGRDVDLSQRHARWMREKGQRADAARAIARRWAK
QAAEGKAGTHSATITEDRSVAIARLIATAFPDRVARRRSGSGEEWQSVGGRGYRLDPASP
LASSQWLAIADVQGAAGGARILSAVPMNEALIDAWIADHGNTRRTARYDASNDRVEAMRE
RRLGSIILSRAPDPEGGDSAALLVEAVRDSGLAVLPWTDGDRHLRARAAFAGIEVLDDDA
LLANLEDWLPPLLSGRRRFSDIPNGALGQALLNLIDWDQRQTLDRLAPAEYRTPAGSNHV
IDYAAEAGPTVTARVQAFFGLDQHPVVGSGAVPLVLSLASPAGRPIQTTRDLPAFWRGSW
ADVVKEMRGRYPKHPWPDAPWEAAATLRTKAADARRSGN
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgccgatccacgccgtccttgctgatctgctggccgccttgcaagacgggtcc
aatgccgtgctgattgcgccaccgggcgccggcaagacaacagcggtcgccccagcgctg
ctcgaccagccatggtgcgatgggcaggtgctcctgctatctccccgccgcattgccgca
cgcgcggcggcagagcggatcgccgagatgggcagggaaaccgtcggacggacaatcggt
tatgcgacccgcatggatgcccgccacgggccggaaactcgggttctggtcctgaccgag
gggattttccgcaaccgcatcatcgccgacccggagctctccggtgtgtcggcggtcctg
ttcgacgaagtgcatgaacgcagcctcgacagcgacttcggcttggctctcgcgctggaa
gcacaggcggccttccgccctgacctgaggctggtcgccatgtcggccacgctcgacggg
gaacgctttgccgcgctgatgggtgatgcgcccaccatcgccagcgaagggcggagccac
ccattgacgctgcgccatatcggccgcgacgccacgctgcgtatcgaggatgacatggcg
cgagcggtgaggcgggtgctgtccgacgaaccggcgggggacatcctagccttcctgccg
ggtgtgcgggagattgagcggacggcggagtgtctcgagggactgtctcttgcgatcctg
ccgctgcatgggcaactcgaccctgcgcaacagcgcgctgccctgcgacccgatccgcaa
ggccggcgcaagctcgtccttgctaccagcatcgccgagaccagtctgaccatcgatggt
atccgtatcgtcatcgacagcggccttgcccggcgggcccgctttgacattgccgccggg
accagtcgcctggtgaccgagcgtgccagtcaggcagcagctacccagcgggccggtcgc
gcagcgcggcagggggcgggtgtagcctatcgtttatgggaggaagcggccacgggtgga
atggcccgttttgatccgccggaaatcagcgacacagacttggcgccattgctccttgat
tgtgcggcgtggggggagagtgatccgcaacgcctcgcttggctcgacccgccgccggcg
ccagcgctggcagaagcacgcagccggttaactcgcatgggcgcgttagatgctggcgga
ggcctgaccgaacatggccattccattgcgggactgccactgccccctgcaatcgcgcat
atggtcatagccggggcagagacagggcaggcggcgctcgccgccgaacttgcgatgctg
ctgtcagaacgcggtcttggcggacgcgatgtggacctttcgcagcggcacgcccgttgg
atgcgcgaaaaggggcagcgcgcggatgcggcccgggctatcgcccgtcgctgggcaaag
caggcggcagaaggcaaggcaggcacacatagcgctaccataacagaggaccggtccgtc
gccatcgcccgcctgatcgccactgcttttccggaccgcgtcgcccgccggcggagtggg
tcgggcgaggaatggcagtctgtgggcggccgcggctaccgactcgatcccgcttctccg
ctcgccagttcacagtggcttgcaattgccgacgtgcagggtgcggccggtggtgcgcgc
attctctcggccgtgccgatgaacgaggcactcattgacgcatggatcgccgaccatgga
aatacccgtcgtacagcgcgctatgacgcatccaatgaccgcgttgaagcaatgcgagaa
cgtcggctgggtagcatcatcttgtcgcgcgcgcccgacccggaaggcggcgactccgcc
gcccttttggttgaggcggtccgcgatagcgggttggccgtgttgccatggactgatggt
gaccggcatttgcgcgcccgcgccgcttttgccgggatagaagtgcttgatgatgatgcc
ttgctcgccaatcttgaggattggctgccgcctttgctttccgggcgccgacgtttcagc
gacattcccaacggtgcgctcgggcaagctttgctcaatctgattgactgggaccagcgc
cagacgctcgatcgcctggctccggcggaatatcgaacgccggccggatcaaaccatgtg
attgattatgcggcagaagcgggaccgaccgtgacagccagggtccaggcattttttggt
ctcgaccagcatcctgtcgtgggcagcggtgcggtgccgctggtgctgagcctcgcctct
cctgctggcagacccattcagacgacacgcgatctaccggccttttggcgtggcagttgg
gccgatgtggtcaaggagatgcgggggcgctaccccaagcatccctggcctgacgcgcca
tgggaggcagcggcaaccttgcggaccaaggctgcggatgcacgacgttcaggcaattga
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