Sphingomonas lacunae: GV829_12070
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Entry
GV829_12070 CDS
T07071
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
slan
Sphingomonas lacunae
Brite
KEGG Orthology (KO) [BR:
slan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slan03032
]
GV829_12070 (topA)
03400 DNA repair and recombination proteins [BR:
slan03400
]
GV829_12070 (topA)
Enzymes [BR:
slan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GV829_12070 (topA)
DNA replication proteins [BR:
slan03032
]
Prokaryotic type
DNA Topoisomerases
GV829_12070 (topA)
DNA repair and recombination proteins [BR:
slan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GV829_12070 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QJQ33082
UniProt:
A0A6M4AXI5
LinkDB
All DBs
Position
2519570..2522119
Genome browser
AA seq
849 aa
AA seq
DB search
MQLVVVESPAKAKTIEGYLGRDFRVLASYGHIRDLPPKDGSVDPEAGFAMSWETYPDKAK
RLKEIADLAKTADRLILATDPDREGEAISWHVQEVLRAKKALPSKVDRVTFNAITKAAVT
EAMAHPRALDDDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE
REIEAFKPQEYWSVIARMEQGGTPFVARLVRFEGSKIDRLTIGDGATADRAKAAVEAGHF
TVQSVEVKPAMRNPPPPFTTSSLQQEAARKLGFSASHTMRVAQGLYEDGLITYMRTDGVQ
MDGSAIAAARAAIARRFDGGYVPDKPRHYQTKAKNAQEAHEAIRPTDFGRERAGSGDHAR
LYELIFKRALASQMASAQLERTAVELVEATGRHALRATGQVIRFPGFLALYEEGRDDVSG
EDEDSRLLPPLRQGDVPAKHGVDAEQHFTQPPPRFSEASLVKRLEELGIGRPSTYASILQ
VLKDRAYVRLDKNRFHPEESGRLLTAFLERFFERYVSYDFTAGLEDELDDVSGGRADWQA
VLEAFWRDFKPRTAEVMEQKPSDVTAALDEFLAPWLFPDLGDGSDPRACPKCEAGRLALR
GGRFGSFVACSNYPECKFTRPFAQGGSDAAEGGDEALGTDPDSGLEVTRKAGRFGPYVQL
GDGKEAKRSSIPADVANSLDLELALRLLALPREVGTHPESGKVIAAGLGRYGPYLLHDGK
YTKLSSTEDVLEIGMNAAVTRIAEGNARGGRPAKAAGKELGAHPDSGVTIKLLDGRFGPY
VSDGTTHATLPKSADKDAVTLEEAVELINAKIAKGGGKPKKKVAAKKAPAKKATAKKPAA
KKAAAKKDG
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggttgtcgtcgaatcacccgccaaggccaaaaccatcgaggggtatctgggt
cgcgattttcgcgttctcgcctcttatggtcacatccgtgacctgccacccaaggatgga
tcggttgatcccgaagcgggctttgccatgtcttgggagacttatcccgacaaggccaag
cggctgaaggagattgccgaccttgccaagacggccgaccgcctgatcctcgccactgac
cctgatcgcgagggggaggcaatcagctggcacgttcaggaggtgctgcgcgccaaaaag
gccctgccgtccaaggtcgaccgggtgaccttcaatgccataaccaaggcggcggtgact
gaggcgatggcacatccccgcgcactcgatgatgacctgattgacgcctatcgcgcgcgg
cgtgcgctcgactatctcgttggcttcaccctctctcccgtgctctggcgcaagctgccg
ggggccaagtcggcggggcgggtgcaatcggtggcactgcggctgatcgttgaccgcgag
cgcgagatcgaggcgttcaaaccgcaggaatattggtcggtcattgcccgcatggagcaa
ggcggcacgccatttgtcgctcgcctcgttcgcttcgagggcagcaagatcgaccggctg
acaattggcgacggggccaccgctgatcgcgcgaaagcggctgtcgaagccgggcatttc
accgtgcagtcggtcgaggtcaaaccggcgatgcgcaacccgccgccgcccttcaccaca
tcaagcctgcaacaggaggcggcgcgcaagctgggcttttcggccagccacacgatgcgc
gtggcgcagggactctatgaggacggcctgatcacctatatgcggaccgacggcgtgcag
atggacggcagtgccattgctgcagcccgcgcggccatcgcgcggcgctttgacgggggc
tatgttccggacaagccgcgccattaccagaccaaggcgaagaatgcgcaggaagcgcat
gaggcgatccgtccgacagatttcgggcgtgaacgcgccgggtccggtgaccatgcgcgc
ctatatgagctgatcttcaaacgggcactggccagccagatggcgagcgcgcagctggaa
cgcaccgcggttgaactggtcgaggccacgggtcggcacgccctgcgcgcgacggggcag
gtgatccgctttcccggcttcctcgccctctatgaggaagggcgcgacgatgtgtcaggc
gaggatgaggacagccgtctgttgccgcctctgcgtcagggcgatgtgccggccaagcat
ggcgtagatgccgaacagcatttcacccagccgccgccgcgcttttccgaggcgagcctc
gtcaagcggcttgaggaactgggcatcggtcgtccgtcaacctatgcctcgatcctgcag
gtgctcaaggaccgggcctatgtgcggctcgacaagaaccgtttccatcccgaggaaagc
gggcggttgctcaccgcgttcctcgaacgcttctttgagcgctatgtcagctatgacttc
accgccgggcttgaggatgagctagacgatgtctcgggcggacgggccgactggcaggcg
gtgctcgaagccttttggcgggatttcaagccgcgtaccgctgaggtgatggagcagaag
ccatcggatgtgacggcggcgctcgacgaatttctcgccccttggctgttccctgatctg
ggcgatggcagcgacccgcgcgcatgcccgaagtgcgaagccggacggctggcgttgcgt
ggcggcaggttcggcagcttcgtcgcctgttccaactatccagagtgcaagttcacacgg
ccctttgcgcagggtggtagcgacgctgccgagggtggcgacgaagcgctgggtaccgat
cccgacagtggactggaggtaacgcgcaaggcggggcggttcggcccctatgtgcagctg
ggcgatggcaaggaagcaaaacgcagttcgatacctgccgatgtcgcgaactcgcttgat
ctcgaactggcgctgcgcctgttggcgctgccgcgcgaggtcggcacgcatcccgaaagc
ggcaaggtgattgccgccgggctggggcgctatggcccctatctgctgcacgatggcaaa
tataccaagctctcctcgaccgaggatgtgcttgaaatcggcatgaatgcggcggtgaca
cggatcgccgagggcaatgcgcggggtggccgaccggccaaggcggcaggcaaggagttg
ggcgcgcatcccgacagcggcgtgacaatcaagctgctcgacgggcgctttggtccctat
gtcagcgatggcacaacccatgcgacactgcccaagagcgccgacaaggatgcggtgacg
cttgaggaagcggttgagcttatcaacgccaagatcgccaagggcggtggcaagccaaag
aaaaaagttgctgctaagaaggctccagcaaagaaggctacggcaaagaagccggcagct
aagaaggcggcggcgaaaaaggacggctga
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