Sphingomonas lacunae: GV829_13675
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Entry
GV829_13675 CDS
T07071
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
slan
Sphingomonas lacunae
Brite
KEGG Orthology (KO) [BR:
slan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
GV829_13675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slan03019
]
GV829_13675
03009 Ribosome biogenesis [BR:
slan03009
]
GV829_13675
04131 Membrane trafficking [BR:
slan04131
]
GV829_13675
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slan04147
]
GV829_13675
Messenger RNA biogenesis [BR:
slan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
GV829_13675
Ribosome biogenesis [BR:
slan03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
GV829_13675
Membrane trafficking [BR:
slan04131
]
SNARE
SNARE associated proteins
Others
GV829_13675
Autophagy
Aggrephagy
Other aggrephagy associated proteins
GV829_13675
Exosome [BR:
slan04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
GV829_13675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
AAA_22
AAA_2
AAA_33
AAA_14
IstB_IS21
TIP49
nSTAND3
RNA_helicase
AAA_28
ATPase_2
AAA_18
NPHP3_N
AAA_7
AAA_24
AAA_lid_PRS2_C
Mg_chelatase
Vps4_C
DUF815
Sigma54_activat
AAA_19
Parvo_NS1
AAA_30
AAA_17
AAA_25
ABC_tran
TsaE
Zeta_toxin
AAA_11
AAA_3
NB-ARC
PhoH
ATPase
SLFN-g3_helicase
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
QJQ33359
UniProt:
A0A6M4AZ61
LinkDB
All DBs
Position
2858431..2860788
Genome browser
AA seq
785 aa
AA seq
DB search
MAESENQEKQDIRLQVANSRPEESGSGIARLPRPMFARLGLTEGDIIEISGKRITASRAV
GPYAEDEGIEVLRLDGLQRANAGVGTGDFVGIRKIESKAAKSVTLAPAQPNLRLQGSGQA
LKRTFIGRPMVAGDIVATTGQQRMGHEGLPPQLRQMLAAPAYALQEIRLTVVETSPKGIV
HIDDSTEIELLPEYVEPKESRRADVTYDDIGGMGETIDQLREMVELPLRYPELFQRLGVD
PPKGVLLYGPPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKALRDVFEKAAKA
APSIIFIDEIDSIAPKRGQVQGEAEKRLVAQLLTLMDGLEPRANLVVIAATNRPDAIDEA
LRRPGRFDREIVVGVPDERGRREIIAIHSRGMPLAEDVDVGELARTTYGFVGADIAALAR
EAAIEAVRRIMPRLNLEAGTIPPEVLDELQVTREDFVGALKRVHPSAMREVMVQAPNVRW
NDIGGLDASAERLREGVELPLKDPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAE
ANFIATKSADLLSKWYGESEQQIARLFARARQVAPCVIFIDELDSLVPARGSGGAGEPQV
TERIVNTLLAEMDGIEEMQSVVVIGATNRPNLIDPALLRPGRLDELVYVSVPNAEGRRRI
LDIHTARMPLAKDVDLDAIAEKANRYTGADLEDLVRRAGMVALRKSRDVPEVTQEDFEAA
LKDTRATVTPEMEREYEKIAGEIKQNAAALNPIGFIAPGMLTPARQTKHGDPEKGDSDKA
RPVTD
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
gtggccgagagcgaaaatcaagagaagcaggacatccgcctgcaggtggccaattcccgc
cccgaggaatctggcagcggcattgcgcgattgccccgcccaatgtttgccagattgggc
ctgaccgaaggcgacatcatcgaaatcagcggcaagcgcatcacggccagccgagccgtc
ggcccctatgccgaggatgaggggatcgaggtgttgcggctcgacgggctgcagcgcgcc
aatgccggtgtcggcaccggggattttgtcggcatccgcaagatcgagtcgaaagcggcc
aaatcggtgacattggcaccggctcaaccgaacctgcggctgcaaggatcggggcaggcg
ctcaagcgcacctttatcggccggccaatggtggcgggggacattgtcgccaccaccggg
cagcaacgcatggggcatgagggcctgccgccgcagttgcggcagatgctcgcggcgccc
gcctatgccttgcaggaaatccgtctgacggtggtggagaccagtcccaagggtatcgtc
cacatcgacgactccaccgaaatcgagcttttgcccgaatatgtcgagcccaaggaatcg
cgccgcgccgacgtgacctatgacgatattggcgggatgggcgaaaccatcgaccagctg
cgcgagatggtcgagctgccgctgcgttatcccgagctgttccagcggctgggcgtcgat
ccgcccaagggcgtactgctctatggcccaccgggcacgggcaagacgaggcttgcgcgg
gccgtggccaacgagagcgaggccgagtttttcctgatcaacggtccggagatcatgggc
agcgcctatggcgagtccgaaaaggcgttgcgtgacgtgtttgaaaaggccgccaaggcg
gcaccgtccatcatcttcatcgacgagatcgacagtatcgcgccgaaacggggccaggtg
cagggcgaggcggaaaagcggctggtagcgcaattgctgacgctgatggacgggctggaa
ccgcgcgccaatctggtggtgatcgccgccaccaaccgtcccgacgcgattgacgaagcg
ctccgccggcccggccgctttgaccgggaaatcgtggttggcgtacccgacgagcgcggc
cggcgcgaaatcatcgccatccacagtcgcggcatgcccctggcagaagatgtcgacgtc
ggcgagctggcgcggaccacctatggctttgtcggtgcggacatcgccgcgctcgcccgt
gaggcggcgatcgaggccgtgcgacggatcatgccgcgcctcaatctggaggcaggcacc
atcccgccggaggttctcgacgagttgcaggtcacccgcgaggattttgtcggagccctg
aagcgcgtccacccctcagccatgcgcgaggtgatggtgcaggcacccaatgtccgctgg
aacgacattggcgggctggacgcctccgccgaaaggctgcgggagggcgtcgaactgccg
ctcaaggacccggaggccttccgccgcctcggcatccgtccggccaagggcttcctgctc
tatggcccaccgggcactggcaagaccttgctggcaaaggctgtcgcccgcgaggcagag
gccaatttcatcgccaccaaatcggctgacctcctgtccaaatggtatggcgagagcgag
cagcagattgcccgcctgttcgcccgagcccggcaggtggcaccctgcgtcatcttcatc
gacgagctcgacagccttgtgccggcgcgcggatcgggcggtgcgggtgagccgcaagtg
accgagcgcatcgtcaacacgctgctcgcggagatggacggcatcgaggagatgcaatcg
gtcgtcgtcatcggcgcgaccaaccggcccaacctgattgatcccgccctgctccgtccg
ggtcggctcgatgagctggtctatgtctcggtgcccaatgcggagggacgtcggcgcatt
ctcgacatccacacggcaaggatgcccttggccaaggatgtcgatctcgacgccattgcc
gaaaaggccaaccgctacacgggcgccgatctggaagatctggtgcgccgggccggcatg
gttgccctgcgcaagtcgcgcgacgtgcccgaggtgacgcaagaggattttgaggccgcg
ctcaaggatacacgggcgaccgtgacgcccgagatggagcgggaatatgaaaagatcgcc
ggcgagatcaaacagaatgccgccgcgctcaaccccatcggcttcatcgcgccgggaatg
ctgacgccggcacgccagaccaagcatggcgaccctgaaaagggcgacagcgacaaggcg
aggccggtcaccgactga
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