Solitalea lacus: L2B55_04125
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Entry
L2B55_04125 CDS
T09884
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
slas
Solitalea lacus
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slas03009
]
L2B55_04125 (rlmD)
Enzymes [BR:
slas01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
L2B55_04125 (rlmD)
Ribosome biogenesis [BR:
slas03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L2B55_04125 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
TRAM
Methyltransf_25
Cons_hypoth95
MTS
NT5C
Motif
Other DBs
NCBI-ProteinID:
UKJ08363
LinkDB
All DBs
Position
968317..969726
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AA seq
469 aa
AA seq
DB search
MAKKKFEPYIAEGVEIVDIAHDGRAIGRHNDRVIFVDKAVPGDVVDINVTYRRRQLFEGK
VDVLHKPSEYRAQPFCEHFGICGGCKWQHLTYEGQLKYKQKQVVDALERIGGLSTETLTP
ILGSEKTAYYRNKMEFTFSNKRWLTEEDMDNRHNLEQTEALGFHVPQRFDKIIDIEHCYL
QQDPSNSIRNAVRSYALEHKLEFYDLKEHHGFLRNLIIRTASTGELMVIVVFARNDEDTI
NGLMNYIDNHFPQITSLLYIVNQKRNDTIFDQEVITFKGNDHIFEEMEGIKFKISPKSFY
QTNSEQAYNLYKIARNFADFKGDELVYDLYTGAGTIANFVARKVKQVIGVEYVPDAIEDA
KINSAINGIDNTLFYAGDMKDVLNAEFIAQHGKPDVVITDPPRAGMHADVVARINEMEPE
KIVYVSCNPATQARDLALLSEKYEVAKIQSVDMFPQTIHVENVVLLKRK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaagtttgaaccctatattgcagagggagtagaaatagttgacattgca
cacgatggacgtgcaattggtagacacaatgatcgggtaatttttgttgataaagcagta
cctggcgatgtagtggatattaatgtaacctacagaaggagacagttgtttgaggggaag
gtagatgttttgcataaaccttctgaatatcgcgcccagcctttttgtgaacattttggt
atttgtggtggttgcaaatggcaacatttaacctatgaaggtcagttaaaatataaacaa
aagcaggttgtagacgccctggagcgcattggaggtttaagtacggaaacacttactccg
atattgggttcagaaaaaacagcgtattaccgcaacaaaatggaattcactttttccaat
aagcgatggcttacggaagaagatatggacaatcgtcacaacctggagcagaccgaagct
ttaggcttccatgttccgcaacgtttcgataagattattgatattgaacattgctatttg
cagcaagatccttccaactcaatcagaaatgcagtaagaagctatgccttggaacataaa
ctcgaattttatgatcttaaagagcatcatggttttttacgtaatctaatcattcgtact
gccagtaccggcgagctgatggtgattgttgtttttgccagaaacgatgaggatactatt
aatggcttgatgaattatattgataaccatttccctcaaataacttcattgttatatatc
gttaatcaaaaaaggaatgataccatttttgatcaagaagtgattacctttaaaggtaac
gatcatatttttgaagaaatggaggggattaagttcaaaatttctcctaaatctttctat
caaaccaattcggaacaagcctataatctatataaaatagcacgcaattttgctgatttt
aaaggcgatgaattggtatacgacttatatacaggcgccggaactattgcaaactttgtt
gcccgaaaagtaaaacaagtaataggggttgagtatgtgccagatgccattgaagacgcc
aaaatcaattctgccataaatggaattgataatactttgttttatgcaggcgacatgaag
gatgtgcttaatgctgagtttattgcccagcatggcaagcctgatgtggtaattaccgat
ccgccaagggctggtatgcatgctgatgtggttgcccgtattaacgaaatggagcccgaa
aagattgtgtacgtaagttgtaatccggccacgcaagctcgtgacttagctttattaagt
gaaaaatacgaagttgcgaaaattcaatcggttgatatgttcccacaaaccattcacgtt
gagaatgtagtattgctaaaaagaaaataa
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