Solitalea lacus: L2B55_05525
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Entry
L2B55_05525 CDS
T09884
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slas
Solitalea lacus
Pathway
slas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2B55_05525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slas03019
]
L2B55_05525
03009 Ribosome biogenesis [BR:
slas03009
]
L2B55_05525
Enzymes [BR:
slas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L2B55_05525
Messenger RNA biogenesis [BR:
slas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L2B55_05525
Ribosome biogenesis [BR:
slas03009
]
Prokaryotic type
rRNA helicases
L2B55_05525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Shikimate_dh_N
Motif
Other DBs
NCBI-ProteinID:
UKJ08626
LinkDB
All DBs
Position
complement(1305691..1307529)
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AA seq
612 aa
AA seq
DB search
MNLFEQLGIGPKTVQAITELGFEAPTPIQEQAIPELLKGNRDFVGLAQTGTGKTAAFGLP
MLELINLDLRQPQALVLCPTRELCLQITNDLVNFSKYLGQVNVVAVYGGASIINQMRDLK
RGAHIIVATPGRMLDIINRNVINFDNVKISVLDEADEMLNMGFQEDINAILSHTPDTKNT
WLFSATMPNEVRRISQNYMTDPFELTVGNRNEGNANIEHEYYVAKARDKYAAFKRLVDFN
PEIFGIVFCRTKIETQEIAEALIRDGYNADALHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVNDVTHVINYSLPDDVESYTHRSGRTARAGKTGVSMAIVNSKEMGKIRQIERI
IKKKFTKCDIPNGFDVCEKQLFALIHKVHNVQVNDQIDQYLERINAEFADVSKEDIIKRF
ASLEFNRFLDYYKNAPDLNARVDEREGRERGERGERGDRHSMRGGAGKFTRLFVNLGSLD
DFTRGDMLRYICDNAHVSGSKIGRIDVKGVYSFFEIESDNVDKIFEGFKSKDFNGRQVRI
EISQDGDRKREERRSGFGGGRRSEGGGERRGGFSGNRDRGDRNDRGERRSFNGGNRERRP
SNSNSDERKGRW
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattgggcattggccccaaaactgtccaagctattactgagctg
ggattcgaagcgcctactcctattcaggaacaagcaatcccggaacttttaaaaggcaat
cgcgactttgttggacttgcacaaaccggaaccggtaaaactgcagcatttggcttgcca
atgctggagcttatcaaccttgatttgcgtcagccacaagcgttggtattatgtccaacc
cgcgaactttgcttacaaattactaacgacttagtaaatttcagtaaatacctaggccaa
gttaatgttgtagctgtttatggcggcgccagcattattaaccaaatgcgcgacctgaaa
cgaggagctcatatcattgtagctaccccaggccgtatgttggatattatcaaccgcaat
gttatcaactttgataatgttaaaatctctgtattagacgaagctgatgagatgttgaac
atgggtttccaggaagacatcaatgctattctttctcacactcctgacactaaaaacact
tggttattctcggcaactatgccaaatgaggtacgtcgtatttcacaaaattacatgacc
gacccatttgaattaaccgtaggtaatcgtaacgaaggtaacgccaatattgagcacgaa
tattacgttgctaaagcacgtgataaatatgctgcttttaaacgtttagttgactttaac
cctgagattttcggtattgttttctgtcgtaccaaaattgaaacccaggaaattgctgaa
gctttaatccgtgatggatacaatgctgatgctttacatggtgacttatcacaacaacaa
cgcgataaagtaatgaaacgctaccgcgatcgttctttacagttattgattgctactgat
gttgctgcccgtggtattgatgttaacgatgtaactcacgtaatcaactattcacttcct
gatgatgtagaaagctacactcacagaagtggacgtactgctcgtgctggtaaaactggc
gtttctatggctattgttaatagcaaagaaatgggtaaaatccgtcagatcgagcgtatc
atcaaaaagaaattcactaaatgtgatattcctaacggatttgatgtttgtgaaaaacaa
ttatttgcccttattcacaaagtacacaacgtacaagtgaacgaccagatcgatcagtac
ctggaacgcataaatgccgaatttgctgatgttagcaaagaggatatcatcaaacgtttt
gcatccttagagttcaaccgtttccttgattactataaaaacgctcctgatttgaacgcc
cgtgtagacgagcgcgaaggtcgtgaacgtggtgaacgtggtgaaagaggtgatcgccat
tcaatgcgcggtggagccggtaagtttactcgtttattcgttaacttgggttctcttgat
gactttacacgtggtgacatgttacgttacatttgcgacaatgcacatgtaagcggtagc
aaaattggccgtattgatgttaaaggcgtatactctttcttcgagattgaaagcgataat
gttgacaaaatctttgaaggctttaaatcaaaagacttcaatggtcgtcaggttcgtatt
gagatttcccaagatggcgaccggaaacgcgaagaacgtcgttcgggctttggcggaggc
cgtcgcagtgaaggtggaggtgagcgccgaggaggctttagtggcaaccgtgatcgtggc
gatcgaaatgacagaggcgaacgcagaagtttcaacggaggcaatcgtgaacgtcgtcct
tcaaacagcaatagcgacgaaagaaaaggtcgttggtaa
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