Solitalea lacus: L2B55_07325
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Entry
L2B55_07325 CDS
T09884
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slas
Solitalea lacus
Pathway
slas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2B55_07325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slas03019
]
L2B55_07325
Enzymes [BR:
slas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L2B55_07325
Messenger RNA biogenesis [BR:
slas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L2B55_07325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKJ08970
LinkDB
All DBs
Position
1717805..1719163
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AA seq
452 aa
AA seq
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MSKTFEDFQFNRQILNAIEEAGYTTPTLIQQKAITPILSGNDLMGIAQTGTGKTAAYVLP
MVMKLKYAQGQNPRALILVPTRELALQVLDATQALSKYTDLRITAIFGGIGPKTQIETIK
AGVDVIIATPGRFMEIYLKGDLLVKQLNYFVIDEADKMMDMGFLPQIHKILEVIPRKRQN
LLFSATMHARIESLAGDFLKFPVKVEVTQQATPAETVSQALYYVPNLRSKINLMMHLLKN
QEDVRKLIIFTKTKTTADNISKYLTRQFGEDQVRVIHANKGQNSRINAINQFKNDDIRIL
VATDVAARGLDVSDVSHVINFDVPLIYEDYVHRIGRTGRANKTGDAITFCNEAERYHIEK
IQKLIRQQIPVCEIPAGVFVEETAYEEHQAMAREIDEQKRKADPDFKGAFHEKKNPFAKK
VEKTKKDQKRNYVDPKSKEARFGPKTKARKKR
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaacatttgaggattttcagttcaaccgccaaattctaaacgcaatagaagag
gcgggatatacaaccccaactttaattcagcaaaaagccattactcctattttatcaggt
aatgatttaatgggtattgcacaaacaggaaccggaaaaacggctgcatatgtgttacca
atggtgatgaagcttaaatatgcacaagggcaaaatccgcgtgcattaattctggtgcct
acccgggagcttgctttgcaagtgttggatgccacacaagctttatcgaaatatactgac
ttgcgtattacagcaatttttggcgggatagggccaaaaacacaaatagaaactataaaa
gccggcgttgatgtgattattgcaactccgggtcgatttatggaaatctatctgaaaggc
gatttgcttgtaaagcagctgaactattttgtgattgatgaggcagacaaaatgatggat
atgggctttttgcctcaaattcataaaattttggaagtaatacctcgtaagagacagaat
ttacttttctcagcaaccatgcacgcaaggattgagagtttagccggtgatttcttgaaa
tttccggttaaggttgaggttactcaacaggctacacctgccgaaaccgtttcgcaggcc
ttgtattatgtccctaacttgcgctcaaaaattaacctgatgatgcatttgttgaaaaat
caggaggatgttcgtaagctgattatttttaccaaaaccaaaactactgctgataatatt
tccaagtatttgactcggcagtttggggaggatcaggtacgggtaatacatgctaataag
gggcaaaattcaaggatcaacgccatcaatcaatttaagaatgatgacatacggattcta
gttgctacagatgtagctgcacgcgggttggatgtttctgacgtgagccatgttattaat
tttgatgttccactcatttatgaagactacgtgcatcgaattggacgcacgggcagggcc
aataaaaccggtgatgccataactttttgtaatgaggctgaaaggtatcatattgaaaaa
attcaaaaactgattaggcagcaaattccggtgtgtgagattcctgctggagtttttgtg
gaagaaaccgcttatgaggagcatcaggccatggctcgtgaaattgatgaacaaaagcga
aaagccgacccagattttaaaggagctttccatgagaaaaaaaatccatttgctaagaaa
gttgaaaaaacaaaaaaggatcaaaaacgtaattatgtagatcctaaaagtaaagaagcc
cgatttggacctaaaaccaaagccagaaagaaacgataa
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