Solitalea lacus: L2B55_09765
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Entry
L2B55_09765 CDS
T09884
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slas
Solitalea lacus
Pathway
slas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2B55_09765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slas03019
]
L2B55_09765
03400 DNA repair and recombination proteins [BR:
slas03400
]
L2B55_09765
Enzymes [BR:
slas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L2B55_09765
Messenger RNA biogenesis [BR:
slas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L2B55_09765
DNA repair and recombination proteins [BR:
slas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L2B55_09765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
RNA_pol_Rpc34
Motif
Other DBs
NCBI-ProteinID:
UKJ05834
LinkDB
All DBs
Position
2303883..2305790
Genome browser
AA seq
635 aa
AA seq
DB search
MQTIHEILKHYWGHLSFRPLQEEIINSILNGIDTLALLPTGGGKSICFQVPALLQEGVCI
VVTPLIALMKDQVENLKKRDIKAVAIFSGMSYREIDIALDNCIYGDVKFLYLSPERLSTE
IVKVRLRKMKVNFVAIDEAHCISQWGYDFRPSYLTIASLRELLPGKPFLALTATATEKVK
QDIQEKLLFKNSKVFTRSFERKNLTYVVRNAENKHEKLLEIVRKVPGSGIVYVRNRRETQ
ELARFLWMNKVSAEFYHAGVPTNERFKKQQAWINNKVRVMVATNAFGMGIDKPDVRFVIH
FEPSDSIESYYQEAGRAGRDEKKAFAVLLYCNADKNEMIEKQLAAFPEAEDIRATYQALG
NYFQLAIGAGEFLSYDLNVNEFCSRFNLKALNVLNCLKFLEKEGYLNFSESVSLPSRIRF
LISNEELYKFQIANAKFDIPLKIILRSYGGLFDGYVPIDEKLLAYRTNTDYSTYVQLLKK
LDELGIIHYLPQSDWPRVTFLTPRADAKTMFINKVYIEERKENLLDKLQQMLNYAEETSV
CRSVFIRKYFNESEVSECGVCDICIVRKKLETKEIDLELFRNSIVAILSAGPVQFSAIRS
QFNSISEDNLTDYIRLLIDEGTLYMEDNGVLTLLY
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccatccacgaaatattaaaacattattggggccacttatcatttagaccgtta
caagaggagattattaattccattttgaatggtattgatacattggcacttttgccgacc
ggtggtgggaaatctatttgttttcaagttcctgcattattgcaagaaggcgtttgtatt
gtggttactccgttaattgctttaatgaaagatcaggttgaaaacctgaaaaaaagagat
ataaaagctgttgctatattttcgggtatgagttatcgtgaaattgatatagcacttgat
aattgcatttatggcgatgttaagttcctttatctctctcccgagcgcttatcaaccgaa
attgtgaaagttcggttaagaaaaatgaaagtaaactttgtggctattgacgaagcgcac
tgcatttcgcaatggggttatgattttcgaccttcatacttaacaatagccagtttaagg
gagttattgccaggtaaaccgtttttagcacttacggcaacagcaacagagaaagtaaaa
caagatatccaggagaaactcctgtttaagaactcaaaagtatttacaaggagttttgag
cgtaagaacttgacatacgtggttagaaatgcggaaaataagcacgaaaaactacttgag
attgttagaaaggtacctggaagtggaatcgtttatgttcgtaaccgacgggaaacacaa
gaacttgctcggtttctttggatgaataaggtaagtgctgagttttatcatgctggagtt
cctacaaacgaaaggtttaaaaaacaacaagcatggattaataataaggttagggtaatg
gtagctaccaatgcttttgggatgggtatcgataaacctgatgtccggtttgtgattcat
tttgagccgtcagatagcattgagtcttactaccaggaagcaggaagggcaggtcgtgac
gaaaaaaaagcatttgcagttttactgtattgtaatgctgataaaaatgaaatgattgaa
aagcaattagctgcttttcctgaagcagaagatataagagcgacttatcaggctttaggt
aattactttcagttggcaattggtgccggagaatttttaagttatgatttaaatgttaat
gagttttgctctcgatttaacttaaaggctttaaatgttttaaattgtttaaagtttttg
gagaaagaaggatacctgaatttttctgaaagcgtttctcttccttctcgtattcgtttt
ttaattagtaatgaagaattgtataagtttcaaatagctaatgctaagtttgatattcct
ttaaaaattattctgcgttcttatggtggtttgtttgatgggtatgttccaatagatgaa
aaattattggcttatcgtaccaatacagactactccacctatgttcaacttttgaaaaag
ctggatgaattgggcattatacattatctgccacaatccgattggcccagagttactttt
ctcactccccgtgctgatgctaaaacaatgttcattaataaagtttatattgaggagcgg
aaagagaatctcttggataagcttcaacaaatgttgaattatgccgaagaaacgtctgtt
tgtaggagtgtttttataaggaaatattttaatgaaagtgaggttagtgaatgtggtgtg
tgtgatatttgtattgttcgtaaaaaactggagacaaaagagattgatttagagttgttt
cgtaactcgattgttgccattctttctgctggtcctgttcagttttcagctattcgttcc
caatttaattctatctctgaagataacttaacagattatataaggttgctaatagatgaa
ggcacactttatatggaggataatggtgttttgaccctactttattag
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