Solitalea lacus: L2B55_13910
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Entry
L2B55_13910 CDS
T09884
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
slas
Solitalea lacus
Pathway
slas02020
Two-component system
slas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
L2B55_13910 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L2B55_13910 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slas03021
]
L2B55_13910 (rpoN)
Transcription machinery [BR:
slas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L2B55_13910 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
GET4
HTH_12
DUF4158
HTH_IclR
MarR
DUF6443
PRKG1_interact
Motif
Other DBs
NCBI-ProteinID:
UKJ06620
LinkDB
All DBs
Position
complement(3206332..3207804)
Genome browser
AA seq
490 aa
AA seq
DB search
MLKQNLQQKLLQKLSPQQLQFIKLLQIPTVMLDARIKEELEENPALEDVSLMANNEEKDE
YSFDEDSDDFNESDSDVSEEFSIDDYIQDDEEKDYATSMAYDGEEEDDKKELPYAESNTF
FEMLQFQLSLVDLDDRHFLIAQQLIGSLDDDGYLRRPILSLMDDLAFSQNVDATVEEVES
MLKIIQSFDPPGIGARDLQECLLIQLRKKDQENRIVQLAIEIVENYLEEFTKKHYEKLER
SLNISSAELKSAVSEILKLNPKPGDSSADANSKQLQIIPDFHIVNNDGVLILTLNSRNAP
ELRVSRDYKEMFQTYDKQTNKDKKLKEAVQFVKQKLDSAKWFIDAIKQRQQTLIKTMNAI
MHYQYDYFLEGDERKLKPMILKDIADQIGMDISTVSRVANSKYVQTEFGTFLLKSFFSEA
IQTESGEEVSNREVKKILEDCIGNEDKHRPLADEKLAEILKDKGYNIARRTVAKYREQMN
IPVARLRKEL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacagaacctacagcaaaagctattacaaaagttatcccctcagcagcttcag
ttcattaagctgttgcagatacctactgtaatgctggatgcacgaattaaggaagagttg
gaagagaatcctgctttagaagatgttagtctgatggctaataatgaagaaaaagatgaa
tatagttttgatgaagatagcgatgattttaacgaatcagatagcgatgtttcagaagaa
tttagcatagatgactatattcaggatgatgaagagaaggattacgcaacttctatggct
tatgacggagaagaggaagatgacaagaaagagctcccgtacgcagaaagcaataccttt
tttgaaatgctccaatttcaattaagtttagttgatttggatgaccgtcattttttaatt
gcccaacaactaattggtagtttggatgatgatggttacctgcgtcggccaatattgtct
ttaatggatgatttagccttttctcaaaatgttgatgctacagtagaagaggttgaatca
atgctcaaaatcattcaaagttttgatcctccgggtataggtgccagagatcttcaggaa
tgtttgttgatacaacttcgcaaaaaggatcaggaaaatagaatagtgcaattggctatc
gagatagttgaaaactatcttgaggaatttactaagaagcactacgaaaaattggaacgc
tcactaaatatttcatctgctgagctcaaatcggcagtaagtgaaatcttaaagctaaac
cctaagcctggtgattctagtgctgatgccaattctaagcagctgcaaattatccctgat
tttcacattgttaataatgatggggtgctaattttaacattaaattcccgtaatgctcct
gaattgagggtgagccgtgattacaaggagatgtttcaaacttatgataagcaaactaat
aaggataaaaagctaaaagaggcggttcaatttgtaaagcaaaaacttgattcggcaaaa
tggtttatagatgcgattaagcaacgtcagcaaacgcttataaagactatgaatgccatt
atgcattatcagtacgattactttttggagggggatgaacgcaaattgaagccaatgatt
cttaaagatattgctgatcagattgggatggatatatcaactgtttctcgtgtggcaaat
agtaaatatgtgcaaaccgaatttggtacgttcttgttaaagtcgttcttctcagaagct
attcaaacagaaagcggagaagaggtttcgaaccgagaagttaagaaaattttggaagac
tgtattgggaatgaagataaacatcgtcctctggcagatgaaaagcttgccgaaattctt
aaggataaagggtataatattgcccgtcgtacagtagctaaataccgtgaacagatgaat
attccggttgcacgtttacgaaaggagttatag
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