Solitalea lacus: L2B55_16050
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Entry
L2B55_16050 CDS
T09884
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slas
Solitalea lacus
Pathway
slas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2B55_16050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slas03019
]
L2B55_16050
Enzymes [BR:
slas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L2B55_16050
Messenger RNA biogenesis [BR:
slas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L2B55_16050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ERCC3_RAD25_C
AAA_22
AAA_19
SUa-2TM
DUF5612
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKJ07028
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All DBs
Position
3735720..3737024
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AA seq
434 aa
AA seq
DB search
MTFNDLNLIEPITKALQGEGYTNPTPIQEQAIPVILQGKDLLGCAQTGTGKTAAFAIPTL
QLLSQNSRHEQGPKAIKALILTPTRELAIQIGDSFAAYGKYLKLNHLVIYGGVSQLAQTA
ALSKGVDILIATPGRLLDLMNQKFVHLHKIQFFVLDEADRMLDMGFVNDVKRVISKLPEK
RQTLFFSATMPPVIQQLADSILTQPVKVEVTPVSSTAETINQSVYMVDRSSKKALLNHIL
EDQSIETALVFSRTKHGADRIARDLNKGKIKAEAIHGDKSQNARQRALSNFKSKEIRVLV
ATDIAARGIDIDELTHVINFDVPYEAETYVHRIGRTGRAGANGSAFTFCDAEEMTYLKDI
TKLIGKAIPTVEDHPFPLTIQRILEVQNQQTQKKNDNRQNKRGNSHNKNKGATQHSKKKQ
HRKGTPNKQARQQP
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaacgatttaaacttaatagaacctattaccaaagcgcttcaaggcgaaggc
tatactaaccccactcctattcaggaacaagctattccagtaattttgcagggaaaagac
ctacttggctgcgcacaaaccggcaccggtaaaactgctgcctttgcaattccaacacta
cagttactcagccaaaatagccgccatgaacagggccctaaagccattaaagccttaatt
cttacaccaactcgagaattagccatccaaattggcgatagctttgctgcatatggaaaa
tatttaaagctaaatcacctggtgatttatggaggagtttctcaattggcacaaactgcc
gctctgagcaaaggagttgatattttaattgccaccccggggcgcctactcgacctaatg
aaccaaaagttcgtccatctgcataaaattcaatttttcgttttggatgaagcagataga
atgctcgacatgggctttgtgaatgatgttaaaagagtaattagtaaactccctgaaaaa
agacaaacattattcttttcggctaccatgccacctgttattcaacaattggccgacagt
atcttaacgcaacctgtaaaagtagaagtgacccctgtttcatctactgccgagaccatt
aaccaatcggtttacatggttgacagaagtagtaaaaaagctttactcaaccatatactg
gaagaccaatcgattgaaacagcgctggtttttagccgtaccaaacatggagccgaccgc
atagcccgtgatctgaataaggggaaaattaaagcagaagccatacacggcgataaatca
caaaatgctcgacaacgtgccttaagcaattttaaatcaaaggaaattcgtgttctggta
gccactgatattgctgccagaggaattgatatagatgagcttacccatgtgatcaacttc
gacgtgccatacgaggcagaaacttacgttcaccgaatcggccgtacaggaagagcggga
gctaatggctcggcatttacattttgtgatgccgaggaaatgacttatttgaaagatatt
accaaactgataggcaaagccattccaactgttgaggatcatccctttccattaacaata
caacgaatactggaagttcaaaatcagcaaactcagaagaaaaacgacaaccgtcaaaac
aaacgcggcaattctcataataagaacaaaggagccacccagcatagtaagaaaaaacaa
caccgaaaaggcactcctaataagcaagccaggcaacaaccataa
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