Solitalea lacus: L2B55_18310
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Entry
L2B55_18310 CDS
T09884
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
slas
Solitalea lacus
Pathway
slas03420
Nucleotide excision repair
slas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L2B55_18310
03430 Mismatch repair
L2B55_18310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slas03400
]
L2B55_18310
Enzymes [BR:
slas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L2B55_18310
DNA repair and recombination proteins [BR:
slas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L2B55_18310
MMR (mismatch excision repair)
Other MMR factors
L2B55_18310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
DEAD
TetR_C_19
Motif
Other DBs
NCBI-ProteinID:
UKJ07461
LinkDB
All DBs
Position
4260087..4263242
Genome browser
AA seq
1051 aa
AA seq
DB search
MSSPYTLQFQEALERLNSQQREAVETIDGPVLVVAGPGTGKTQILAARIGKILKDTDTDA
NNILCLTFTDAGAINMRKRLVEFIGPDAYRVNIYTFHSFCNEVIQENLEYFGKINLDPIS
DLEEAELLKELIDEFSNDNPLKRYTGEVYFERDRLRNLFSLIKKEDWKLDFVNKAINDYI
DDLPNREEFVYKRKHKHHNAGDVKEEKIAEEIEKMHLFRAAVADYPKYQAKMRARNRYDF
DDMIVWVLNAFKNDPNLLARYQEQFQYLLVDEYQDTSGAQNELIQLLIADREKPDIFVVG
DDDQSIFRFQGANMSNILDFAFAYQNDLTTIVLTENYRSTQAILDASRALINNNQERLTK
ALKLDKNLQASNQKLNQLTVVPELIEYANVEHEVVGIASQIVDLLAKGIEPEEIAVIYRN
HSQVDELIKYLSAKNIAVNTKRKIDLLSLPFVENIINILRYLAMEINTPYSGDDLLFEIM
HYDFFNIPPIETAKISIEVFRKNYSVNNRDNDAVFGKTSIRRWISDMANPKKLTLFDQYT
SAEIKQLSNDLEFWIKESQNLTLQELFEKIILRAGILKYIMKSKERNWFMEVLTSLFDFL
KEENRKKTDLTLQQFIDLIDLMKLNGISIDLNKTLFAEKGVNFMTAHGSKGLEFEYVFVM
GCTKKIWDVTKKGGGTKNYKYPDTLTTKVGEGSELEESRRLFYVALTRAKHSLFVSFAAE
NKKGKEQEHSQFLYEMRQESNLKIERKQLSDEAMFDFIVTQFNEDDKPNIELIDKNYLDL
LLQKYTLSVTHLSSYLDCPLRFYFQNLIRVPAGKSPSATFGLAIHWALNKLYLKMREQDA
FPDENYLFDQFSWFMFRNRESFTKDQFKLRMEYGQKIITPYYNKYVNSWNKVAVTERSIK
NVTIDNVPIKGNLDKIEFNGKQANVVDYKTGKYNNAKDKFKRPDEKNPNGGDYWRQAVFY
KILVDNDKTNDWEVVSTEFDFVEPISDNEYHKEKVVITPDDIEIVREQIISTYAKIMNHE
FSQGCGKEDCHWCNFVRSNFEQQDILIEEEI
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctccatatactttacaatttcaagaagcccttgaaagactgaactcccagcag
cgtgaagctgttgaaaccatagacggaccagttctggttgttgcagggccgggaactggt
aaaacacaaattttggctgcccgaattggtaaaattttgaaagataccgatacagatgct
aataatattttgtgcttaacgtttaccgatgctggcgccatcaacatgcgtaagcgtttg
gtcgaatttatcgggcctgatgcttaccgcgtgaatatttacactttccactcgttttgt
aatgaagtgattcaggaaaacctggagtattttggcaaaatcaacctcgatccgatttct
gatttggaagaagctgaattattaaaggaattgatcgatgaattcagcaatgacaatcca
ttgaagcgttatacaggcgaggtttattttgaacgtgatcgcctgcgtaatcttttcagt
ctgattaaaaaagaagactggaagctcgatttcgttaataaagccattaacgattatatt
gacgatttgccgaaccgtgaagagtttgtgtacaaacgaaaacataaacatcataatgcc
ggcgatgtaaaagaggagaagattgccgaggagattgagaaaatgcaccttttcagagca
gcagttgcagattatccaaagtatcaggctaaaatgcgtgcacgcaatcggtatgatttt
gacgacatgattgtttgggtgcttaatgcctttaaaaatgatcctaacctgcttgccaga
taccaagagcaatttcaatacttgctggtagatgaatatcaggatacgagtggtgctcaa
aatgaattgattcaattgcttattgccgatcgtgaaaagcccgacatttttgttgttgga
gacgatgaccagtcaattttccgttttcagggagccaacatgagcaatatccttgatttt
gcttttgcttatcaaaacgaccttacaaccatcgttctaacggaaaattaccgttcgacc
caagctattttagatgcctccagagcactgatcaacaataaccaggagcgactaaccaaa
gcgctcaaacttgacaaaaaccttcaagcttcaaaccaaaagcttaatcaacttacggta
gtgcctgagcttattgaatatgcaaatgtagagcatgaggttgttggcattgcctcccaa
atagttgacttattagctaaaggtattgaacctgaagaaattgcagttatttaccgtaac
catagtcaggttgatgaactaataaaatatctttcagcaaagaatattgcagttaacact
aaacgcaaaatagatttactatcccttccgtttgttgagaatatcatcaatattttgcgc
tatttggcaatggaaattaatacaccatacagtggcgatgatttgttgtttgaaataatg
cattatgatttcttcaacattcctccaattgaaaccgccaaaatcagtattgaagttttc
agaaagaactactcggttaataaccgcgataatgatgctgtttttggcaaaacgtcaatt
cgcaggtggatctcggacatggctaatccaaaaaaacttacattatttgatcaatataca
tccgcagaaataaagcaactcagtaacgatctggaattctggattaaagaatctcagaac
cttacgctacaggagttatttgaaaaaatcattcttcgcgccggtatccttaaatatata
atgaaatcaaaagaacgaaattggttcatggaagtgctaaccagtttatttgatttccta
aaagaagaaaaccggaagaaaaccgatttaaccctgcagcaattcatcgacctaattgat
ctgatgaagctaaatggtatttccatcgacttaaacaaaaccctgtttgctgaaaaggga
gttaactttatgacggctcatggttccaaaggattggagtttgagtatgtgtttgtgatg
ggttgtaccaaaaagatttgggacgtaaccaaaaaaggcggaggaaccaaaaattacaaa
tatcctgatacattaactacaaaagttggtgaaggttcagagctggaggagtcgagaagg
ttgttttatgttgcacttactcgtgctaaacactccttattcgtttcttttgcagccgaa
aataaaaaaggaaaggaacaagagcattcacagtttctttatgaaatgcgacaagagagc
aatttgaagattgaacgaaaacagctttctgacgaagcaatgttcgattttattgttact
caatttaatgaagacgataaacctaatattgaacttattgataagaattacctggatctg
cttttacaaaagtacacgctcagcgttactcaccttagcagttacctggattgtccgctg
cgcttctatttccaaaacctgattcgtgttccggcaggcaaaagtcctagtgccactttc
ggtttagcgatacactgggccctgaacaagttatacctcaaaatgcgtgaacaggatgct
ttccctgatgaaaattacctattcgatcaattttcatggtttatgtttcgcaaccgagaa
tcattcactaaagaccagtttaaactaaggatggaatacgggcaaaagatcattacgccg
tattataataaatatgtaaactcctggaataaggtggcagttaccgaacgtagcattaaa
aatgtaactattgacaatgttccgattaagggtaatctggataaaattgaatttaatgga
aaacaggccaacgtagtagattacaaaacaggaaaatacaataatgccaaggataaattc
aaacgcccggatgagaaaaaccctaatggcggagactactggaggcaagcggtattttat
aagattttagttgacaatgacaaaacaaatgattgggaagtggtgagtacagagtttgat
tttgtcgaacctattagcgataatgagtaccataaagaaaaagtggttattactcctgac
gatattgaaattgtacgcgagcagatcatttcaacatatgctaaaattatgaaccatgag
ttttcgcaaggttgcggtaaggaagattgccattggtgtaattttgtccggagtaacttt
gagcagcaagatattttaattgaggaggaaatttaa
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