Streptococcus lactarius: J4854_00050
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Entry
J4854_00050 CDS
T07623
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slat
Streptococcus lactarius
Pathway
slat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4854_00050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slat03400
]
J4854_00050 (mfd)
Enzymes [BR:
slat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4854_00050 (mfd)
DNA repair and recombination proteins [BR:
slat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4854_00050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_16
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUB38919
LinkDB
All DBs
Position
7853..11347
Genome browser
AA seq
1164 aa
AA seq
DB search
MNVIDLVIQNSDLLSWQQGLQKNNRELILGLSATTKAIVMASAFDSIEKAVLITSSYNEA
ERLASDFIALLGEDKVHTFLGDDNPLAEFVFASQERQFARLEALNFLCQEDRQGILVTNV
SGIKLLLPSPKVFASSIFQLKVGQEIDLTTLSETLQKIGYQKVIQVLQQGEFSLRGDILD
IFEIEQLQPYRVEFFGDEIDGIRIFDPESQRSVENVEEVQLKAVSDLLLQEEDFIRGQKQ
LEQLQEQTANEAFKSYLAEILGDISQKQVHPDLRKFISFFYEKQYTLFDYLPKHTPVFLD
DYQKIVDQIARFDLDVANLLTEDLHKNRASSRQVYFADTSTILRKYTPATYFSNFQKGLG
NLKFDHLYQFNQYPMQEFFGQFDLLKEEIERYQKSNYTVIIQATSHHNLQQLHKNIEEYE
IRLDYIDGDSIIPQASQLIVGGLAHGFQFVDEKIVYITESEIYQKKIKRKIRRQTISNAE
RLKNYNELEKGDYVVHQVHGIGQYLGIETIEISGVHRDYVSIQYQNGDRISIPVDQIQML
SKYVASDGKTPKINKLNDGRFQKTKQKVQTQVEDIADDLIKLYAERSQLEGFAYSSDDEN
QEAFEQDFPYIETDGQLRSIEEIKKDMESNRPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHYANFKERFEAFAVEVAVLSRFQSKAEQKETLEKLKKGRVDIIIG
THRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKKKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTFVLETNPTIIRDAVLREIDRGGQVYYLYNKVDTIEQKVSEL
KELIPEASIGFVHGQMSEVRLENTLLDFINGEYDVLVTTTIIETGVDIPNANTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKSLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAIAKKQGQEHRRQKSNAELNLQIDAYLP
NEYISDQRQKIEIYKQIREMNSASDYEYLQDELIDRFGEYPDVVAYLLEIGLVKVYLDQV
FVRLVERKQQKLTVKFEPIAKQLFLTQDYFKALSMTQLKAQIAEEKGLIEVIFDIRNKKD
FEILEALKQFGQTLLEIKQEKEEN
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcattgatttagtgattcaaaactccgaccttctatcctggcaacaaggatta
cagaaaaacaatagagagttaattttaggattatctgcgactactaaggctattgtgatg
gcttccgcttttgattctattgaaaaagcagtcctcataacctctagttataacgaagcg
gaacgattggctagtgattttattgctttacttggagaggacaaagtccatacatttttg
ggagatgataaccctttagcagaatttgtttttgcttcacaagaaaggcaatttgcacga
ttagaggctttgaactttttatgtcaagaggatcgtcaaggtatccttgtgaccaatgtg
agtggtatcaaactactattaccttctcctaaagtttttgcatctagcatttttcaattg
aaggttggtcaagaaatcgacctaactactttgagtgaaaccttacagaaaattggctac
caaaaggtgatccaggttttgcaacaaggagaattcagtctaagaggagatattttagat
atctttgagattgaacaactccaaccctaccgggttgaattttttggagatgagattgat
gggattcgaatctttgacccagaaagccagcgttctgttgaaaatgtcgaagaagttcaa
ctgaaagcagtgagtgatctattattgcaagaggaagattttatccggggtcaaaagcaa
cttgaacaattgcaagagcagacagcaaatgaagcatttaagtcttatctagcagaaatc
ctaggagatatttctcaaaagcaagtccatccggatcttagaaaatttattagtttcttt
tatgagaaacaatatacattatttgattatcttcctaaacatactccagtctttttagat
gattatcaaaaaatagtagatcaaatagcaagatttgacctagatgtagctaatctcttg
acagaagatttacataaaaatcgagcctcttctcgtcaagtgtattttgcagatactagt
accatattacgaaaatatacacctgcaacttatttttcaaactttcaaaaaggcttggga
aatctgaagtttgatcatttgtatcagtttaatcaatacccaatgcaggagttttttggg
caatttgatttgctaaaagaggaaattgaacggtatcagaaatcaaactatactgtcatt
atccaagcaacttctcatcacaatcttcagcaactccataaaaatatagaagagtatgaa
attcgactagattatattgatggtgattcaatcattcctcaagctagtcaattaattgtt
ggaggactggctcacggtttccaatttgttgatgaaaaaattgtctatattacagagtca
gagatctaccagaagaaaattaagcgaaagattcgcagacaaaccatttccaatgccgaa
cgtttgaaaaattataatgaactagaaaaaggcgactatgttgttcatcaagttcatggt
attggtcaatatttgggaattgaaacgattgaaatttcgggtgtccatcgtgattatgtc
tccattcaatatcaaaatggagatcgcatctcgattcctgtcgatcagattcagatgttg
tccaaatacgttgcaagtgatggaaaaacgccaaaaattaacaaattaaacgatggtcgt
ttccaaaaaacgaagcaaaaggttcagacccaggtggaggatattgcggatgatttgata
aaactctatgcagagcgtagtcaattagaaggttttgcttattcttcagatgatgaaaat
caagaagcttttgaacaagattttccatatattgaaacagatggtcagttgcgctccatt
gaagaaatcaaaaaagatatggaatcgaatcgtccgatggaccgactgctggttggagac
gtcggttttgggaaaacagaggttgctatgcgagccgcctttaaggcagtaaatgatcat
aaacaagtagcagtgctggttcctacgactgttcttgcccaacaacattatgccaatttt
aaggagcgttttgaagcttttgcggtagaagttgctgttttaagtcgtttccagagtaaa
gcagagcagaaggaaacgcttgaaaaattgaaaaaaggacgagtggatattattattgga
actcaccggttattgtctaaagatgtcgtcttttcagacttgggcttgattgtgatcgat
gaagagcaacgttttggagtaaagcacaaagaaaccttgaaagaattgaaaaaaaaggtg
gatgtgcttaccttgacagctacccctattcctcggacgctccatatgtctatgctagga
attcgagatttgtctgtcattgaaacacctccaactaatcggtatcctgtgcaaactttt
gtattagagaccaatccaactattattcgagatgctgtgttgcgggagatagatcgtgga
ggtcaagtgtactatctttacaacaaggtagatacgattgagcaaaaagtatccgagtta
aaagagttgattccagaggcttcgattggctttgttcatggccaaatgagtgaagttcgc
ctggaaaataccttgttggatttcattaatggcgaatacgatgtcttagtgacgacaacc
attattgagacaggtgtggatattccaaatgctaatacactctttattgaaaatgcggat
catatgggactttcaactctttatcaactaagaggtcgtgtgggacgaagcaaccgaatc
gcttatgcttatttgatgtatcgtccagacaaatctcttacagaagtgtctgaaaaacgt
ttagaagctattaaaggttttactgagttggggtctggatttaaaattgctatgcgagat
ttatcgatccgtggagcaggaaatattttgggggcttctcaatctggtttcatcgattca
gttggttttgaaatgtattctcaattgttagaagaagctattgctaagaaacaaggccaa
gagcatcgcaggcaaaagagtaatgcagagttgaaccttcaaatagatgcttatttacct
aatgaatatatttcagatcaacgtcaaaaaattgaaatttacaaacaaattcgtgaaatg
aattctgcgagtgactatgaatacttgcaagatgaattgattgatcgttttggagaatac
ccagatgttgtcgcctatctacttgaaattggtttagtgaaagtatacttggatcaagtc
tttgtccgtcttgttgagagaaaacaacaaaaattgacagtgaaatttgaacctattgcc
aaacaactgtttttaacacaggattatttcaaagctctgtcaatgacacagttgaaggca
cagattgctgaagaaaagggattaattgaagtaatctttgatattcgaaacaagaaagat
tttgaaattttagaagctctgaagcaatttggtcaaaccttattggaaattaaacaggaa
aaagaagagaactag
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integrated database retrieval system
