Streptococcus lactarius: J4854_03635
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Entry
J4854_03635 CDS
T07623
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slat
Streptococcus lactarius
Pathway
slat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4854_03635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slat03019
]
J4854_03635
03009 Ribosome biogenesis [BR:
slat03009
]
J4854_03635
Enzymes [BR:
slat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4854_03635
Messenger RNA biogenesis [BR:
slat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4854_03635
Ribosome biogenesis [BR:
slat03009
]
Prokaryotic type
rRNA helicases
J4854_03635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUB39545
UniProt:
A0A9X0WQ32
LinkDB
All DBs
Position
694703..696274
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AA seq
523 aa
AA seq
DB search
MKFNEFNLSASLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEGEKFDTMTRLMDVEQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKK
RMKGMKPATAEEAFQAKKHVALKKIERDFEDESIRTNFEKFGKDARKLAAEFTPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSSGGFSGKGKGGRGNGYRGDQRRDRNRREDRDG
GRRDFKRKSNKNSRDFEGKGNKRPHRTSNEKKNGFVIRNKGDK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattcaacgaatttaacctctctgcttccttattagcagaaattgaaaaagctggc
tttgtagaagcgagccccatccaagaacaaactattcctttggcccttgagggaaaagac
gtcatcggtcaagcgcaaacagggacgggtaaaactgcggctttcggtcttccaactttg
gagaagattgatgtggataataccgttatccaagcccttgtcattgcgccaacgcgtgaa
ttggcagttcagagtcaggaagaattgttccgctttggacgtagtaagggtgtcaaagtc
cgttctgtctatggtgggtccagcattgaaaagcaaattaaagctttgaagtcaggcgct
cacatcgttgtgggaacacctggacgcttactggatttgatcaagcgtaaggctttgaaa
ctcaatcatattgaaaccttgatcctggatgaagcagatgaaatgcttaacatgggcttt
ttagaggatatcgaagctattattagccgtgttcctgaggaacgtcaaaccttgctcttt
tcagctaccatgccggatgccattaaacggatcggtgtccagtttatgaaagagcctgag
cacgtcaagattgctgctaaagaattgacgacagaattagtagatcagtactatatccgt
gtcaaagaaggtgagaagtttgacaccatgacccgtctcatggatgtggaacagcctgaa
ctagccatcgtctttggtcggaccaagcgccgtgtcgatgagttgacgcgtggtctcaag
atccgtggtttccgagcagaaggaattcatggagatttggatcaaaacaaacgcctgcgt
gtccttcgcgatttcaaaaatgggaatctggatgttcttgtagctacggatgtagcagcg
cgtggcttggacatttcaggtgtgacgcatgtctacaactacgatattccacaagatcca
gaaagttatgttcaccggattggtcgtacaggtcgtgctgggaaatcaggacagtccatt
acctttgtcgcacctaatgaaatgggctatctccaaattattgaaaacctcaccaaaaag
cggatgaaggggatgaaacctgcgacagcagaagaagccttccaagcgaaaaaacatgtg
gcgttgaagaaaattgaacgtgactttgaggatgaaagcatccggaccaactttgagaag
tttggcaaagatgctcgcaaactggcagcagaatttactccggaagaattggcgatgtat
attttgagcttaactgttcaagatccagatagccttccagaagtggaaattgcgcgtgaa
aaaccattgccatttaaaccatcttctggtggatttagtggaaaaggcaaaggtggtcgt
ggaaatggctaccgtggagaccaacgccgtgatcgaaaccgtagagaagaccgagatggt
ggacgccgtgatttcaaacggaagtccaataaaaatagccgagactttgaaggaaaagga
aacaaacgcccacatcgtacttcaaatgaaaagaaaaacggctttgtcatccgaaataaa
ggggataaataa
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