Streptococcus lactarius: J4854_05990
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Entry
J4854_05990 CDS
T07623
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
slat
Streptococcus lactarius
Brite
KEGG Orthology (KO) [BR:
slat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slat03032
]
J4854_05990 (topA)
03400 DNA repair and recombination proteins [BR:
slat03400
]
J4854_05990 (topA)
Enzymes [BR:
slat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J4854_05990 (topA)
DNA replication proteins [BR:
slat03032
]
Prokaryotic type
DNA Topoisomerases
J4854_05990 (topA)
DNA repair and recombination proteins [BR:
slat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J4854_05990 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF2996
Toprim_4
phage_tail_N
HypA
Motif
Other DBs
NCBI-ProteinID:
QUB38104
LinkDB
All DBs
Position
complement(1170641..1172728)
Genome browser
AA seq
695 aa
AA seq
DB search
MVTKTKRKSSTTKKNLVIVESPAKAKTIEKYLGRNYKVMASVGHIRDLKKSTMSIDFDNN
YEPEYINIRGKGPLINDLKKEAKKAKQVFLASDPDREGEAISWHLAHILNLDASEKNRVV
FNEITKDAVKNAFKEPRQIDMDLVDAQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQS
VALKLIIDRENEINDFKPEEYWTIDGVFKKGTKQFQASFYGIDGKKMKLNTNEEVKAVLE
RLDSKDFTVEKVEKKERRRNAPLPYTTSSMQMDAANKINFRTRKTMMVAQQLYEGINIGS
GVQGLITYMRTDSTRISPVAQNEAANFIVDRFGEKYSKHGSRVKNASGAQDAHEAIRPSS
VFNTPESIAKYLDKDQLKLYTLIWNRFVASQMTAAVFDTMNVRIGQNGVQYTANGSQVKF
DGYLAIYNDSDKNKMLPDMVEGDIVKQVNSKPEQHYTQPPARYSEATLIKTLEENGVGRP
STYAPTIETIQKRYYVKLAAKRFEPTELGEIVNKLIVEFFPDIVNVTFTAEMEGKLDDVE
LGKEEWQKVIDSFYKPFSKEVAKAEEEMEKIQIKDEPAGFDCEVCGSPMVIKLGRFGKFY
ACSNFPDCRHTQAIVKEIGVECPNCHQGQIIERKTKRNRIFYGCNRYPECEFTSWDKPIG
RDCPKCGHYLVEKKVRGGGKQVVCSNGDYEEEKVK
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtggtaacaaaaacaaaaaggaaaagtagtacaaccaagaaaaatttggtaattgtggag
tctcctgcaaaggccaaaacaatcgagaaataccttgggcgtaactataaagtcatggcc
agtgttggccatattcgggacctgaaaaaatcaaccatgtcgattgacttcgacaataac
tatgaaccggaatatatcaatattcgcggaaaaggtcctttgatcaacgacttgaaaaaa
gaagccaaaaaggccaagcaagtctttctcgcaagtgacccggaccgtgaaggagaagct
atttcatggcacttggctcatattttgaatttggatgcaagtgaaaagaaccgtgtggtc
tttaacgaaattaccaaggatgccgttaaaaatgcctttaaagaaccgcgtcaaatcgat
atggatttggttgatgcccagcaagcgcgtcgtgtcttggaccggattgtagggtattca
atttcgcctattctttggaaaaaggttaaaaaaggactttctgcagggcgcgtgcaatca
gttgctctcaaattaatcattgatcgtgaaaatgaaattaatgattttaagccggaagaa
tactggaccattgatggtgtcttcaaaaaagggaccaagcaattccaagcaagcttctat
gggattgatggcaagaagatgaagctcaacaccaatgaagaggtgaaagcagttcttgaa
cgcctagatagcaaagattttactgttgaaaaggtggaaaagaaagaacgtcgtcggaat
gcaccacttccttacaccacctcttctatgcagatggatgcagccaataagattaacttc
cgtacacgcaagaccatgatggtcgctcagcaattgtacgaaggaatcaatattggctct
ggtgttcaaggtttgattacctatatgcgtaccgactccacacggatcagtccggttgcg
caaaacgaggcagctaactttatcgtggatcgcttcggtgagaaatattctaagcatgga
agtcgcgtgaaaaatgcttccggtgctcaagatgcccacgaagccattcgtccgtctagc
gtcttcaacactcctgagagcattgctaaatacttggacaaggatcaattgaagctctat
accttgatttggaatcgctttgtagctagtcaaatgacagctgctgtctttgataccatg
aatgtccgtataggtcaaaatggcgtacaatacactgcgaatggaagccaggtgaagttt
gatggttatttggcgatttataacgattcagataagaacaagatgttgccggatatggta
gaaggtgatatcgtcaagcaggtcaatagcaagcctgagcaacactatacccaaccacct
gctcgatattctgaagcaaccttgatcaagactttagaagaaaacggagtggggcgtcct
tcaacttacgcaccaaccatcgagaccattcaaaaacgctattatgtcaagctcgcagcc
aaacggtttgaacctactgaattaggggaaatcgtcaataaactcatcgtcgaattcttc
ccagatatcgtcaatgtgactttcacagcggaaatggaagggaaactcgatgatgttgaa
ctcggtaaagaagagtggcaaaaagtcattgacagtttctataaaccattctctaaagaa
gtcgcaaaggctgaagaagagatggaaaaaatccaaatcaaagacgaaccagcgggtttt
gattgtgaagtctgtggcagcccgatggtgattaaattaggacgttttggtaagttctat
gcttgtagtaatttcccagattgtcgccacacccaagccattgtcaaagaaatcggggtg
gagtgtccaaactgtcaccagggacaaatcatcgagcgcaaaaccaagcgcaaccgtatc
ttctatggatgcaatcgctatccagagtgtgaatttacctcttgggataagccgatcggt
cgggattgtccaaaatgtggccactacttagttgagaaaaaagttcgtggtggcggcaaa
caagtcgtttgtagcaacggtgactacgaagaagaaaaagtgaaataa
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