Sugiyamaella lignohabitans: AWJ20_1034
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Entry
AWJ20_1034 CDS
T05270
Symbol
RRP43
Name
(RefSeq) Rrp43p
KO
K12586
exosome complex component RRP43
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_1034 (RRP43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_1034 (RRP43)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AWJ20_1034 (RRP43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
30032792
NCBI-ProteinID:
XP_018735241
UniProt:
A0A167DCM4
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Position
A:complement(3294348..3295235)
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AA seq
295 aa
AA seq
DB search
MEGAATPLSFPPEVFARLEPDIYLQRHLELGLRPSGLRAFDEFRKATIQASEPLPGTLGS
AVISVGGTTVVCGITGGITEQKGKHGVYPNVEVIRGTRNGPPTQEEMVISQRAFQLLNNT
DYIDPVNFVIPGAEKTKWLVLSASVQVLSRTGPCFDAVWTAIITALKNTRIPQMEVDPDT
KQVVSDLSTVSPLKLSDESASLDQFSSTFAIGEVQKDQKTVVIADIEGETEEACLNSRIN
VVTSPSGLLTGLTIAVTSSNATGINKGIQVSREHIQTVLASARKRASELATAPVS
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggagggagctgctacgccgttgtcgtttccacctgaggtgtttgccaggctggagcct
gatatttatctgcagagacacttggaactgggacttcgacccagtggactgagagcgttt
gacgagttcaggaaggccacgatccaggcgtcggagccgctgccagggacattaggttcg
gctgttattagtgtaggaggtacgaccgtcgtgtgtggaattaccggcggtattacggaa
cagaagggaaagcacggtgtatatcctaatgttgaagtcattcgtggtactcgcaatgga
ccacccactcaggaggagatggttatctcacaacgagcattccaattgctcaataacact
gattatattgatccagttaatttcgtaattcccggcgccgaaaaaactaaatggcttgtt
ttgagtgccagtgttcaggttttgagcaggactggcccctgtttcgacgctgtgtggaca
gccattatcactgcattaaaaaacacaagaattcctcagatggaggtcgatcctgataca
aagcaagttgtcagtgatctgtcgaccgtaagtccattgaagctttctgatgagtctgct
tccttggaccagtttagcagcacctttgctattggtgaggtgcaaaaggaccagaaaaca
gtagttatagccgacatcgagggcgaaaccgaagaggcatgtctcaatagtcggataaat
gtcgtgacttcgccgtccggtctcttgactggattgacgattgctgttacatcgagtaac
gctactggtattaataagggtattcaagtgtcgagagagcatatccagactgtactggca
tctgctcgcaaaagggctagcgaactcgctactgctcctgtgagctag
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