Sugiyamaella lignohabitans: AWJ20_1059
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Entry
AWJ20_1059 CDS
T05270
Symbol
SPT5
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
AWJ20_1059 (SPT5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slb03021
]
AWJ20_1059 (SPT5)
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_1059 (SPT5)
Transcription machinery [BR:
slb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
AWJ20_1059 (SPT5)
RNA polymerase I system
AWJ20_1059 (SPT5)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
AWJ20_1059 (SPT5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW5_SPT5
KOW
KOWx_SPT5
KOW2_Spt5
CTD
KOW1_SPT5
SH3_KIN17_C
DUF6897
DUF150_C
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
30032819
NCBI-ProteinID:
XP_018735266
UniProt:
A0A167DDF8
LinkDB
All DBs
Position
A:complement(3370730..3373084)
Genome browser
AA seq
784 aa
AA seq
DB search
MVLVPIKEYPDMFRVNKSKEQELTPGNYVRIKRGKYMGDLAIVENLSENGLEARLKVVPR
LDYGKSASVIDSDALKRKRGGFGGAAAAKARPPPRLFSATEASQYDQRNLQRRGANSFSY
AGEDYENGYLLKDFKISFLTTDNVNPRLEELTRFNNASEEGIDLLALSQSMKKSALATGS
NFQPGEHVEVHSGEQAGMQGKVIDVTGDIVTIVGTGQLLKDEKFEVPISTLRKRFSVGDH
VRVINGNYKDDTGMVVKISLRDNSVTLLSDLSQEEITVFSKDLKAASDIGGSNVLGKFEL
YDLVQLNAQAVGCIVNIERESVQVLDQDGQIRTLPPSSIIMKVIKDQRSRFATDRNGREI
REGDTVREVSGEGRQGKVLHIHRLYIFLHDRDIAENLGVFVSKIGNVQTVSTKGARDEAQ
PGMVDLNKMNPEVRGMGPPQVHRATRGNIPRNRVIGKRVTIGRGSQYKGFSGLIKDFNDN
MARIELDAKNKVVTVDIEKLLFDNPNGSGKLSYLDALFPGRGMGGGPGGPGGFRGGPGGP
RGGYNGGPGGPGGPGGYNGGPGGPGGFNGGPGGPGGPISGGATPGWAGSKTPSWSGGART
PAWAGGAGNKTPAWAGGAGGNKTPAWNSGSRTPAWNAGGRTPGYSGGDGGRTPAWNAGSS
TPGWDLGNSSSNNLGSSSSSSSSFANPPSSRYSDSNPARSGGILYNSAPTPGFAASTPGA
LSAPTPAPYRDDLAPTPGAPTPGPLGAPTPAPFGAPTPGPIGAPTPGAWGIDDGETPKYE
ADTP
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggtgctggttcctattaaagaatatccagatatgttccgggtgaacaagtcaaaagaa
caagaactaacacccggaaactatgttcgtatcaagcgaggaaagtacatgggagacctg
gctattgtggagaatctcagtgaaaacgggcttgaagcgcgactcaaggtcgtaccaaga
ttagattacggtaaatcagcgtcggtgattgattcagatgctttgaagagaaaaagaggc
gggtttggcggagcagcagcagccaaggcccggcctcctcctcggctgttttcagccact
gaagcatctcagtacgaccagagaaacctgcaaagaagaggcgccaactcgttttcgtat
gctggtgaagactatgaaaatggttatttattaaaagatttcaaaatctcgtttctgact
accgacaatgtcaatcctcgtctggaagaactgactcgattcaataatgccagtgaagag
ggaattgatttgctggctctgtctcagagcatgaaaaagtctgctttggctactggatcg
aatttccagcctggtgagcatgtcgaggttcatagtggagaacaagctggtatgcagggt
aaagtgatagatgtcactggagatattgtcactattgtaggtaccggccagttactgaaa
gacgagaaattcgaggtgcctatttcgactcttcgtaaacgattctcggtaggagaccac
gtacgagttatcaacggtaattataaagatgatactggtatggttgtaaagatctcgtta
cgagacaacagcgtcactttattaagtgatctgtcacaagaagaaattaccgtattttct
aaagacttgaaagcagcgtcggatattggaggatccaatgttctaggtaagtttgaattg
tacgatttggtgcagttgaatgcacaagcagtcggctgtattgtgaacattgagcgagaa
tcggtacaagttcttgaccaggacggacaaatcagaacattaccacccagttctattatc
atgaaagtgattaaagaccaacgatcacggtttgctacggatcgtaacggacgagagatc
cgcgagggcgatactgttcgtgaagtatcaggagaaggtcgtcagggtaaagtgcttcat
attcaccgattgtatatatttttgcatgaccgagacattgctgagaacctgggtgttttt
gttagcaaaatcggcaatgttcagaccgtgtcgaccaaaggagctcgagatgaagctcag
cctggcatggtggatctcaataaaatgaaccccgaagttcgtggtatgggcccacctcaa
gtccatcgtgctactagaggaaacatcccacgaaacagagtcattggcaagcgagtgact
attggccgaggatctcaatacaagggattcagcggtcttatcaaggacttcaacgataat
atggcgcggatcgagctcgacgctaaaaataaagtcgtcactgtcgatatcgagaaactg
ctatttgacaatcccaatggctcgggaaaactgtcgtatttggacgcattatttcccgga
cgtggaatgggaggaggtcccggcggtcctggtgggttccgaggaggtcctggtggaccc
cgtggtggttataatggcggaccaggaggtcctggtggtcctggcggatataatggagga
cctggtggacctggtggatttaatggaggtcctggcggaccaggagggcctatttcaggt
ggagctacccctggatgggctggttccaagactccatcgtggtcaggaggagctcgaaca
cctgcctgggcaggtggtgctggaaataaaacaccagcatgggctggaggggcaggagga
aacaagactcccgcatggaattctgggtctcgaactcctgcctggaatgctggaggaaga
acacccggatacagtgggggagatggaggacgaacacctgcctggaatgccggatcctcg
acccctggttgggatctcggcaatagttccagtaacaatcttggatcttcatcctcgtct
tcatcgtcgtttgccaatccaccatcctcacgatacagcgacagcaatccagcccgcagc
ggtggcattctctacaactcggcaccaaccccaggattcgcagcatccactcccggagca
ctcagcgccccgacccctgctccctaccgcgacgacctagcacccactcccggagcacca
acccccggtccacttggcgccccgacccccgcacccttcggagcacccactccgggcccc
attggcgcacctacgcccggtgcctggggcatcgacgacggcgagacccccaaatacgag
gccgacaccccctaa
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