Sugiyamaella lignohabitans: AWJ20_1452
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Entry
AWJ20_1452 CDS
T05270
Symbol
DBP1
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase DBP1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
slb
Sugiyamaella lignohabitans
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_1452 (DBP1)
03041 Spliceosome [BR:
slb03041
]
AWJ20_1452 (DBP1)
03036 Chromosome and associated proteins [BR:
slb03036
]
AWJ20_1452 (DBP1)
Enzymes [BR:
slb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWJ20_1452 (DBP1)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AWJ20_1452 (DBP1)
mRNA cycle factors
Common to processing body (P body) and stress granule
AWJ20_1452 (DBP1)
Spliceosome [BR:
slb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
AWJ20_1452 (DBP1)
Chromosome and associated proteins [BR:
slb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
AWJ20_1452 (DBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
Motif
Other DBs
NCBI-GeneID:
30033256
NCBI-ProteinID:
XP_018735647
UniProt:
A0A167DQH5
LinkDB
All DBs
Position
A:4486495..4488444
Genome browser
AA seq
649 aa
AA seq
DB search
MAEITSKMQSLSVNDKPSGGENGSGAINPGGKYIPPHRSRNVDSGDSSAGSFNGGNGYRR
GGGSGYGNGGFNRGYDNGGFNRGGYGGGYGNGGGYGNGGYNRGGYGRDRGDRGAFGGSST
HKRGNRGRFVDGKHIAGAKDERLELELFGTADDSKFQSTGINFDNYDDIPVEASGNEVPE
PINTFDTPPLEALLVENITLARYTRPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFP
ILSQSYINGPAPLPERANAGYSRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV
YGGADITTQLKQIDQGCDLLVATPGRLVDLLERGRISLANIRYLVLDEADRMLDMGFEPQ
IRRIVEGEDMPSVEDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQHIE
YVEDEDKKSVLLDILSSGDQGLILIFVETKRMADNLCDFLLSQDFAATSIHGDRTQRERE
RALDTFRSGRAPIMVATAVAARGLDIPNVKHVINYDLPTDIDDYVHRIGRTGRAGNVGVA
TAFFNRGNRGVARELQDILKEANQEVPAFLETISRESSFGRGGRGGSRGGSSRTANTRDF
RRGGGAGGGYSNGGGHYDRNGGYGGGSGYGNSYGNGGGYGNADSNNSWW
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaattacttcaaagatgcagagtttgtctgtaaatgacaaaccatctggtggc
gagaatggctcgggagccatcaacccaggtggtaaatatatccctcctcacagatccaga
aacgtcgattcgggagattcgtcagcaggttctttcaacggtggtaatggttatcgtcgt
ggcggcggaagtggctacggtaacggtggattcaaccgtggttatgataatggtggattc
aatcgtggtggttacggtggcggttacggcaacggtggtggctatggcaatggtggttac
aacagaggcggatatggccgagaccgtggtgaccgtggtgcctttggcggctcttcgact
cacaagcgtggtaaccgtggccgttttgtcgatggcaagcatattgctggtgctaaggat
gaacgtttggagttggaattgtttggaactgccgatgattcgaaattccaatctaccggt
attaactttgacaactatgacgatattccagtcgaagcttctggtaacgaggttcctgaa
cctattaatacttttgatactcctcctttggaagcgcttcttgttgagaacattaccttg
gctagatataccagacctaccccagttcaaaagtactctgtgcctattgtcgctgctggc
cgtgatttgatggcttgtgcccaaactggttctggtaagactggtggtttcttgttcccc
attttgtctcaatcttatattaatggtcctgctcctttacctgagagagccaatgctgga
tacagcagaaaggcctaccctacatcacttatcttggctcctactcgtgagcttgtttca
caaatctttgacgaggctagaaagtttgcctaccgttcatgggttcgtccttgtgttgtt
tacggaggtgctgatatcactacccaattgaagcaaattgatcaaggatgtgacttgctg
gtcgctactcctggtcgtcttgtcgacttgcttgagcgtggccgtatttctttggccaat
atccgttaccttgttcttgatgaggccgatcgtatgcttgatatgggtttcgagcctcaa
attagacgtattgtcgagggcgaggatatgccttctgttgaggaccgtcaaaccctcatg
ttctcggccactttccccagagatattcaaatgttggccagagatttcttgaaggactac
attttcttgtcggttggtcgtgtcggttccaccagtgagaacattactcaacacattgag
tatgttgaggatgaggataagaagtctgttttgctggacattttgtcgtctggtgatcaa
ggtttgattttgattttcgtcgagactaagcgtatggctgataatttgtgcgactttttg
ttgtcgcaagattttgctgctacttctatccacggtgaccgtactcaacgcgagcgtgag
cgtgctcttgatactttccgttctggccgtgctcctattatggttgccactgctgttgca
gcccgtggtttggatatccctaatgtcaagcacgttattaactacgacttgcccactgat
atcgatgactatgtgcaccgtattggtcgtaccggacgtgctggtaacgttggtgttgcc
actgctttcttcaaccgtggtaaccgtggtgttgccagagagttgcaagatatcttgaag
gaggccaaccaagaggttcctgctttcttggagaccatttctcgtgagagcagcttcggt
cgtggcggccgtggtggtagccgtggcggttcgtctcgtactgccaacacccgtgatttc
cgtcgtggtggcggtgctggcggtggctactccaacggtggtggccactatgaccgcaat
ggcggttatggcggtggcagcggatacggtaacagctacggcaatggtggtggttacggt
aacgccgactccaacaacagctggtggtaa
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