Sugiyamaella lignohabitans: AWJ20_154
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Entry
AWJ20_154 CDS
T05270
Symbol
RSE1
Name
(RefSeq) Rse1p
KO
K12830
splicing factor 3B subunit 3
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AWJ20_154 (RSE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slb03021
]
AWJ20_154 (RSE1)
03041 Spliceosome [BR:
slb03041
]
AWJ20_154 (RSE1)
03036 Chromosome and associated proteins [BR:
slb03036
]
AWJ20_154 (RSE1)
Transcription machinery [BR:
slb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
AWJ20_154 (RSE1)
Spliceosome [BR:
slb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
AWJ20_154 (RSE1)
Complex B
AWJ20_154 (RSE1)
Complex C
U2 SnRNP specific factors
AWJ20_154 (RSE1)
Chromosome and associated proteins [BR:
slb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
AWJ20_154 (RSE1)
TFTC complex
AWJ20_154 (RSE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
30033353
NCBI-ProteinID:
XP_018734404
UniProt:
A0A161HHZ2
LinkDB
All DBs
Position
A:492373..496050
Genome browser
AA seq
1225 aa
AA seq
DB search
MSLALYSLTLQKPGAITASIVGQFSGNRNQEIVVARGSWLELLKPDPNLGQLRSVLSYNC
FGILRSLQTFRIAGSTKDNIVIGSDSGRIAILEYDEKKNTFKQIHLETFGKTGVRRIVPG
QYLAVDPKGRATMIASVERNKIVYVLNRDAQLNITISSPLEAHTVKSLVYALISVDVGYD
NPVFAAIECDYDDDKVYSSKLSAKVYRKKYGHDPSGELDDEDVDMEDDVPPMRRKKLTYY
ELDLGLNHVVRKWTDRIDSTANILVQVPGGNDGPSGVLVASDNTITYKHLNNPSHTVPIP
KRRRKNYEIPAVKDETNGHTSSEFSDPDYESPVYIVSALVHKMRGAFFFLLQSNYGDVYK
LWLDHDGQSVQKMYIKYFDTIPLTVSLNILKSGFLFSASESGDHLFYQFEKLGDNDDETE
FTSVDEYKLKDIVFTPKPLDNIQLVDRITALNPLLQTQVANLTGDDAPQIYTITGQSNHS
SLRKLEHGLLVNEIVSTELPAAPIGLWTTKVTSDDEFDKYIVLSFSNETLVLSIGASVEE
VNDSAFLTSISTILVQQLGRDSLLQVHSRGVRHITANKEVNEWEPPVGTSILCASSNNSQ
VAVGLSSNEIVYFEVDEEGNLNEYEDHKELSESPISIAIGDIPAGRVRSPFLAVGTVDST
IRILSLDLDTTLDTLSVQALSANPSSIRIMNMDDTGFVYLHIGLENGVYIMSILDSVTGE
LSDTRTRFLGPRRVQLFKGKTSGVLDANGEYQGSDEIVLALSTKPWIGYTRNLSFDMVPL
SYVPLSYASGFSSQDCPQGIVSVGGNMLRIFTIDSVEEKINQAKTDLKYTPRRMAENSFS
NNFYVIETENNTVPDVYDQVPVDGVYNKRDSQWASSISVIDPLSQSVLSRIHLEENEAAF
SIANCRFESHDAEYLIVGTAKDQIMLPQSNSGSFIRVYEYVDNGLKFLHKTAVESVPIAL
LEFQGRLVAGIGGKLRIYDLGLKQLLRKCEEDLGLNNIMTLNTQGNRIVVGDIRSSLTFV
VYKEKENRLIPFADDPVARHITCAVMLDYDTVAAGDRFGNIFVLQCPKTISDASDEDGYG
TFIRSQGHFLNGQASKLELVTHYYLEDIPTSLQRASLVSGGNECIICSGLQGTIAAFVPL
TSKQDVKFFAQLENLLRENDVPIAGRDHMMYRSYYAPVKSTFDGDLCERFATLSHDKQEQ
IAASLDRTVREIERKVADVRVRAAF
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggcattgtattcgctgactctacagaagcccggggccattacggcctcgatt
gtaggtcagttttcggggaacaggaaccaggagattgtggttgccagaggttcgtggctg
gagctgctgaaaccagatccaaacttgggccagctacggtcggtattatcgtacaactgt
tttggtatactacggtcgttgcaaacttttcgcattgctggttctacgaaggataatatc
gtcataggctctgactcgggaagaatcgcgattcttgagtatgacgaaaagaaaaatact
ttcaagcaaatccatttggaaacatttggcaagactggcgtgcgaagaatcgttcctggt
cagtatttggccgttgatccgaagggacgcgcgactatgattgcttctgttgaaagaaat
aagatagtatatgttttgaatcgtgatgctcaattgaacatcactatttcatctcctctc
gaagctcataccgtcaaatcacttgtgtatgcactgatttccgttgatgttggttatgat
aatcctgtatttgcagcaattgagtgcgattatgatgatgacaaggtgtattcttccaaa
ttgagtgccaaggtttatcggaaaaagtatggacatgatcccagcggggagctggacgat
gaagatgtcgatatggaagatgacgtgcctcctatgcgacgcaagaagttgacatactac
gagcttgatttgggccttaatcatgtggttcgtaaatggactgatcgcattgactctact
gccaatattctggttcaagtaccaggtggtaatgacggtccttccggtgtgttggtagcg
tcggataatacaatcacttacaagcatttgaataatcccagtcatacagttcctattccc
aaaaggaggaggaagaattacgaaatacctgcggtaaaagatgagacgaatggtcacact
tcatccgaattttcagatcctgattatgaatcacctgtttatattgtttctgctcttgtt
cacaaaatgagaggtgctttcttctttcttctacaatccaactacggcgatgtttataaa
ctatggcttgaccacgatggtcagtctgttcaaaagatgtatattaaatatttcgacaca
attcctttaacagtgtcgttaaatattctgaaatcaggtttcctgtttagtgcttctgaa
agtggagaccatttattctatcagttcgaaaaattaggtgataatgatgatgagactgaa
tttacttccgttgatgagtataaactgaaagatatcgtattcactccgaaaccgttagat
aacattcagctcgttgacagaataacagcattaaatccactacttcagactcaggtggct
aacttaactggtgatgatgctcctcagatttatacaatcacgggccaaagcaatcattca
tctctccgtaagttggaacacggccttttggttaatgagattgtatctacagaacttcct
gctgctccaataggactttggaccaccaaagttacaagcgacgatgagtttgacaaatat
attgtgctctcattttcaaacgaaacactggtgctatccattggtgctagtgttgaagaa
gttaatgactctgcattcctgacctcaatatcaacaatacttgttcagcagctgggccgt
gattctttgctccaagttcattctcgaggtgttcgtcatatcactgcaaacaaagaagtc
aacgaatgggagcctccagtgggaacgagcattctgtgtgcctcaagtaacaattctcaa
gttgctgtgggattatcctctaatgagattgtttatttcgaagtcgacgaggagggcaat
cttaacgagtatgaagaccacaaagagctgtccgaatctcccatatccattgccattggt
gatatcccagctggccgtgtacgcagtccgtttttagctgtcggaacagtggattcaact
atcagaatcctgtccctcgatctggacacaacactagacacgttaagtgtgcaagcgttg
tcagcaaacccaagcagcatcagaatcatgaatatggatgataccgggtttgtatatttg
catattggtttggaaaatggtgtttatattatgtcgattcttgattccgtcactggggaa
ctatcggatacccgtactaggttccttggtcctcgtcgggtgcagcttttcaagggcaag
actagtggtgttctggatgccaatggtgaatatcaaggatcggatgaaattgttttagcg
ctttctacgaaaccatggattggatatacccgaaatttatcatttgacatggttccactc
tcttatgtaccattatcatacgcatctggcttctcgagtcaagactgccctcaaggaatt
gtctcggtgggtggcaacatgctgcgtattttcacaattgattcagtagaggaaaaaatt
aatcaagcaaaaaccgacttaaaatacaccccaagacgaatggcagaaaactcgttttcg
aacaatttctacgtcattgaaactgaaaataacactgtccccgatgtatatgatcaggtt
cctgtggacggtgtatacaacaagcgagactctcaatgggcgtcttctatttctgttatt
gaccctctttcacaatccgtactgtcgagaattcacttggaggaaaatgaagctgcattt
agcatcgccaattgtagatttgaaagccatgatgctgaatacttgattgtaggtactgca
aaagatcaaatcatgctaccccagtcaaattcggggtcgtttatcagagtatatgaatac
gttgataatggtctaaaatttttacacaagacagctgtagaatcggtgcccattgcatta
ctagaattccagggtcgtctcgttgctggaataggcggtaaactgcgaatctacgatctc
ggtctcaaacagctgcttcgtaaatgcgaggaagatcttggtcttaataatataatgacg
ttgaatactcaaggtaaccgtatagttgtcggtgatattcgcagctcattaactttcgtt
gtgtacaaagaaaaggaaaaccgcttgataccttttgccgacgacccagttgcacgacac
attacttgtgctgttatgcttgactatgatacagttgctgctggcgatagattcggcaat
attttcgtattgcagtgtcccaaaactatatcagatgcttccgatgaagacggttatggc
acgttcataagatcgcagggtcatttccttaatggacaagcaagtaaactggagttagta
acgcattactatctcgaagatattccgacttcacttcaaagggctagcttggtgtctggt
ggaaatgagtgcattatttgctcaggtttgcaaggaaccattgctgcttttgttccttta
acatcgaaacaggatgtgaagttttttgcgcagcttgaaaaccttcttcgtgagaatgat
gtcccaattgctggccgcgatcatatgatgtatcgtagctactatgcacccgtaaaatct
acttttgatggtgacctctgcgaacgttttgctactcttagtcatgataagcaggagcaa
attgccgctagtttagatcgaacagtacgagaaattgagagaaaggtcgctgatgtaaga
gtaagagctgccttttaa
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integrated database retrieval system
