Sugiyamaella lignohabitans: AWJ20_1800
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Entry
AWJ20_1800 CDS
T05270
Symbol
CHC1
Name
(RefSeq) clathrin heavy chain
KO
K04646
clathrin heavy chain
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb04142
Lysosome
slb04144
Endocytosis
slb05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
AWJ20_1800 (CHC1)
04142 Lysosome
AWJ20_1800 (CHC1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
AWJ20_1800 (CHC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slb04131
]
AWJ20_1800 (CHC1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slb04147
]
AWJ20_1800 (CHC1)
Membrane trafficking [BR:
slb04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
AWJ20_1800 (CHC1)
Exosome [BR:
slb04147
]
Exosomal proteins
Proteins found in most exosomes
AWJ20_1800 (CHC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_H_link
Clathrin_propel
TPR_Vps41
TPR_COPA_B
Clathrin-link
Motif
Other DBs
NCBI-GeneID:
30033643
NCBI-ProteinID:
XP_018735983
UniProt:
A0A167E0K0
LinkDB
All DBs
Position
A:join(5452265..5452377,5452816..5457490)
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AA seq
1595 aa
AA seq
DB search
MADLPIKFQEHLVLSSVEVPENAITFATCTLESDKYVCEDIVYWKWVSESTLGLISETSI
YHWDITDASQDAPVKITDRHASLAGAQIIGYTVNKAGNWSALTGIRQKDQKIVGNIQLYS
KDRNVSQGIEGHSAAFGTLRLDGATVDTQVFTFANRSATGAAKLHVVEIDHQEGAPIYQK
KAVDLFFPPEASNDFPVSVQVSVKYGIIYIITKYGFIHLYDLETAVCIYMNRISSETIFT
ASTYGPEQSGVLVINKKGQVLSVSVNENTIVEYILNNLSNTALALGLASRGGLPGADSLY
SQQFNQLLNAGNYLEAAKVAATSPRGLLRTQETIQRLKNIQAAPGQISPILQYFSTLLDK
GSLNKFESIELALPVLQQDRKPLFEKWLKENKLESSEQLGDIVRNFDLSLALSVYLRANV
PLKVVAAFAELGEFDKILPYCQKVNYTPDYAVLLQNIVRVNPDKATEFATQLVNTGTSGL
NLDRIVDVFLSQNLIQQATAFLLDALKDNSPDQGHLQTRLLEVNLINAPQVADAILGNEM
FSHYDRARIAQLCEKAGLYQRALEHYDDLKDIKRVVVHTNVLNPDWLVGYFGKLTVEQTL
ESLREMLTVNIRQNLQVVIQVATKYSDLVGPVNLIKLFEEFKTPEGLYYYLQSIVNLSQD
SDVVLKYVQSAAAIGQFSEIERIARDNNYYNPEKLKNFLKDAKLADQLPLIIVCNRFDFV
HDLVLYLYQQQQFKFIEVYVQRVNPAKTPEVVGGLLDVDCDESIIKDLLQTVVGQVPIEP
LVAEVEKRNRLKLLLPFLEAVLNGGSKEPALFDALAKIYIDSNNNPEKFLKENEFYNTLV
VGKYCESRDPYLAYTAYEKGKNDMELIRITNENSMYKHQARYLVARADPDLWTYVLSDEN
IHRRSLIDQVVGTAVPESTNPEDVSIAVKSFMSADLPGELIELLDKIILEPSPFNDNQNL
QNLLILTAIKADKSRVSDYIERLDNYDAEDIAQICIENGLFEEAFQVHKKHNNHSSALEV
LVDHVLSLDRAEDYAEKVDEPSVWSQLGKAQLNGLRINDALESYKRAKDPSNFAETIEIA
TRAGKDEELISYLEMARQTLREPLVDGQLLISYANAERLDDLKNLLSSPNVAELESVGDR
LYNQKQYEAAKIVFTSISNWAKLASTLVFLNDYQSAVDCARKASNIKVWKQVNEACIEHK
EFRLAQICGLNLIVHAEELKDLVERYEYIGCFDELISLFEQGLGLERAHMGMFTELAILY
SKYHPEQLMEHLKLFWSRINIPKVIRACEQAHLWPELVFLYCHYDEWDNASLAMIERAAD
AFDHNSFKEIVVKVTNLEIYYKAINFYMAEQPHLITDLLSALTARIDISRVVRMFQKSDN
LPMIKPFLVNVQSQNLLAVNNAYHDLLIEEEDYKSLRDSVDNFDRYDPLDLAERLEKHDL
IFFRQIAAHLYKKNKKWNKSIALSKEDKLWKDVITTAATSEKTEVAEDVLRYFVDIGNKE
CYVATLYTCYHLIRRDVVSELSWRHGLKDYTMPYTINIEREQGDLLAQLVKDNEERKEKE
KARATQEEQTPILGGANRLMITQGTGYSNGIGAAF
NT seq
4788 nt
NT seq
+upstream
nt +downstream
nt
atggcggacttacctatcaaattccaagagcacctggtgctttcgtcggttgaggttcct
gagaatgccatcacatttgccacctgtacattggaaagcgacaaatatgtttgtgaagac
attgtctattggaaatgggtctcggagagtactttaggtttgatttctgagacctctatt
taccattgggatatcactgatgcttctcaagatgcacctgtaaagatcactgaccgccac
gcatctttagctggagcacaaattattggatacactgtcaacaaggcaggtaattggtcg
gccctaactggtatccgccagaaggatcagaaaatcgttggcaacattcagctttattcc
aaagatagaaatgtgtctcaaggaatcgagggtcattcagctgcatttggtacgctgagg
ttagatggcgctactgtggacactcaggttttcacttttgctaatagaagtgcgactggt
gctgctaagttgcatgtcgttgaaatcgatcatcaagaaggtgctcctatctaccaaaag
aaggctgttgacttgttcttccctcctgaggcgagcaatgacttcccagtttcagtccaa
gtttctgttaaatatggaatcatttatatcatcaccaagtacggttttatccacttgtat
gatttggaaactgctgtatgtatttacatgaaccgcatttcctctgaaactattttcact
gcatcgacttatggacccgagcagtcgggcgttttggtgattaacaaaaaaggacaagtg
ttgtcagtttctgttaatgaaaataccattgtcgaatacattttgaataatttgagcaac
actgcattggctctaggattggcttccagaggtgggttgccaggcgcggattctttgtat
agccaacagtttaaccaattgttaaatgctggaaattatttggaggctgccaaggtcgca
gctacttctcccagaggtttattgcgtactcaggaaactattcaacgtttaaagaatatc
caggcagcccctggccaaatttcacctattttgcaatatttctctactttgttagacaag
ggttctctaaacaagtttgaatctattgaattagcgttaccggttctacaacaagatagg
aagcctctatttgagaaatggttgaaagaaaataaactggaatcttctgagcaacttggt
gatattgttagaaacttcgatctttcattagcgctaagcgtttacttgcgtgcgaatgtt
cctttgaaagttgtcgctgcttttgcagaattgggagagtttgacaagattttgccctac
tgtcaaaaagtcaattatacgccagactatgctgttttgctgcagaacattgttcgtgtc
aaccccgataaggctactgaatttgcaactcaattggtcaacaccggtacctcgggtttg
aatcttgatagaattgtcgatgttttcctttctcaaaacttgattcaacaagccactgct
ttcttgctggacgcgttaaaagacaattcgcccgaccaaggtcacttgcaaacccgattg
cttgaggtgaatttgatcaatgctcctcaagttgctgatgctattcttggtaatgaaatg
ttcagtcactatgatcgtgctaggattgctcaattatgtgagaaggctggtctttaccaa
cgtgctttagaacactatgatgacttaaaggatatcaagagagtcgtcgttcatacaaat
gttttgaaccctgactggctcgttggctactttggcaaattgactgttgaacagactttg
gaatctctccgtgaaatgcttactgtcaacatacgacaaaaccttcaagtggttattcag
gttgctacaaagtattccgacttggtgggtcccgttaatttgattaagctcttcgaggag
ttcaagactcctgagggcctgtattattatttacaaagtattgtaaacctttcccaggac
agcgacgttgttttgaagtatgtccaatctgctgctgctatcggccaattcagcgaaatt
gaacgaattgctagagataacaactactacaatcctgagaaactcaagaatttcctgaaa
gatgccaaactggctgatcaattgcctttgattattgtctgtaacagatttgacttcgtt
catgatttagtcttatatctgtaccaacaacagcaattcaagttcatcgaagtttatgtc
caaagggtgaaccctgctaagactcctgaagttgttggcggtttgctggatgtggattgt
gatgagtccattatcaaggacttgcttcagacggtggtgggacaagtccccattgaacct
ctagttgctgaagtcgaaaagcgtaatcgtttgaaattgttactgcctttcctcgaagct
gttcttaacggaggttctaaagagcctgccttgtttgatgctctggcgaagatttacatt
gacagcaacaataaccctgagaaatttttgaaggaaaatgagttttacaataccttggtt
gttggtaaatattgtgagagtagagatccttaccttgcctatactgcctatgaaaaaggt
aaaaacgatatggaacttatccgcatcaccaatgaaaactctatgtataaacaccaggct
agataccttgtggcaagagctgaccctgatctttggacgtacgtattgtccgatgagaat
attcaccgtagatctttgattgaccaagttgtcggtacagcggtgcctgaaagcaccaac
cctgaagacgtatctatcgctgttaaatcttttatgtcagctgacttacctggtgagctt
attgagttgttggacaagattatccttgagccgtcaccatttaatgataaccaaaacctt
caaaacttactgattttgactgccatcaaggctgataagtctcgtgtcagtgattatatc
gaacgtctcgacaactacgatgctgaagatattgcccaaatctgtatcgaaaatggtctg
tttgaagaggccttccaagtacacaagaagcataacaatcatagcagtgcgcttgaagtc
ctcgttgatcatgtcttatcacttgatcgcgctgaagactatgctgaaaaggttgatgag
ccttcggtctggagccaattaggtaaggctcaattgaatggacttagaattaacgatgcc
ctcgaatcttataagcgagccaaggatccaagcaactttgcggagactattgagatcgct
accagagctggcaaggatgaggagctaattagctacttggaaatggcccgtcaaactctc
cgtgaacctttagttgatggtcagctgctgatcagctacgctaatgctgagcgacttgat
gatttgaaaaacctcttgtcatctccaaatgttgctgaacttgaatctgttggagatagg
ttatataatcagaagcagtacgaggctgctaagattgtgtttacctcaatctctaactgg
gctaagcttgccagtacattggtatttctcaatgactaccaaagcgcagtcgactgtgct
cgtaaggcaagcaatatcaaggtctggaaacaggttaatgaagcgtgtattgagcataag
gagtttagactggctcaaatttgtggtcttaatttgattgttcatgctgaggagctcaag
gatcttgttgagcgatatgagtacatcggttgttttgacgaacttatctcattgtttgaa
caaggtttaggtcttgaaagagctcatatgggaatgttcactgaattggccattctttat
tccaaatatcaccctgaacagctgatggaacatttgaaattgttctggtcacgtatcaac
atccctaaggtcatcagagcttgtgaacaagctcatctttggcccgagctggtattcttg
tactgccattatgatgagtgggacaacgcttccttggctatgattgagcgtgctgctgat
gcttttgatcacaattccttcaaggagattgttgtcaaggtcactaacttggaaatttat
tacaaggctattaatttctatatggctgaacaaccacatctcatcactgatttgttgtct
gcgttgactgcccgtattgatatttctcgagtggtgagaatgtttcaaaagagcgataac
ttgccaatgatcaagcccttccttgtaaacgtacaatcacaaaacctcctcgcagttaac
aatgcttaccacgatttgctgattgaggaagaggattacaaatctctacgggattctgtt
gataatttcgaccgctatgacccacttgatcttgctgaaagactcgaaaagcatgacttg
atttttttcagacaaattgctgctcatttgtataagaaaaacaagaagtggaacaagagc
attgcactttcgaaggaagacaagctgtggaaggatgtcattactactgcggcgacgtca
gaaaagactgaggttgctgaagacgttctccgttactttgttgacattggaaacaaagag
tgttacgttgctaccctgtacacatgttaccacttgatcagacgtgacgttgtcagcgag
ctttcttggagacatggtcttaaggactatactatgccatacactatcaatatagaaagg
gaacaaggcgatcttctggcccagttggttaaagacaatgaggagcgtaaggagaaggaa
aaggctcgtgctactcaagaagagcaaacgcccattcttggaggtgcaaataggctcatg
attactcagggaacaggttactccaatggtattggagctgctttctaa
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integrated database retrieval system
