Sugiyamaella lignohabitans: AWJ20_2087
Help
Entry
AWJ20_2087 CDS
T05270
Symbol
VPS13
Name
(RefSeq) membrane morphogenesis protein VPS13
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
slb
Sugiyamaella lignohabitans
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slb04131
]
AWJ20_2087 (VPS13)
Membrane trafficking [BR:
slb04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
AWJ20_2087 (VPS13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
Motif
Other DBs
NCBI-GeneID:
30033959
NCBI-ProteinID:
XP_018736971
UniProt:
A0A167EV22
LinkDB
All DBs
Position
B:complement(join(341788..341800,341872..345791,348364..348480))
Genome browser
AA seq
1349 aa
AA seq
DB search
MSDGLTAGSEVALPSVLPFEPTDSSLDPLLGSSAALSKLFKLPLNVLEGHLGELVLQIPW
SNLKNQPVKVVIQDVFLLAEPRLDEDYDPEEESRREQELKKERLERLELLEKSTPSQGYS
QQDVQKNQSFTESLINKTIENLQITIRNIHIRYEDQTSVPGHPFSLGFTLEELSALSTDD
EWNPKFIQSITHVTRKLAKLNSLAIYWNTDSDSIRRTSDDESGEKMLDNFRTMIISKEKA
ERNQYILKPVSGIGRITLNKFPSDSQPKSKVQLIFDELGFVFDSDQYRDALWTADLFRLY
MNSKEFKRFRPTVSVKEDPKAWFKYAAEAVRSHIHEKNKPWNWDYLTMRLQIRRRYIDLY
KLRTKSSPPGTLSNPDEQAEFKQLEFDLSFEDIKFYRSLAKAELRKEQAKVKEEKKRTIL
GGTSQSDSGSAAPAASWTSWIWGGGAKNANQASNGDDEVTMTEEQRKELYDVIEWDEKAA
VEKSVTVPQNQITLEVETALESGSFTIRNDPHGASHDVAAVYFNGFKAQFLQRPTSFLTS
ISLQEFRVDDKSEGTLFKQIVTVKPLSHEDDHTHHNVDSHDSTPSTESESAVTSGNSGES
SEDAFFWLSFEKNPLDESADSSLHVKTKSITIFYNAHFLERVARFFKPPKTHLETIGAII
NAAGATVEGIRNQTRIGLEYALQEHKTANVKLDLQAPLIVIPLDVTSWKSPCVIIDAGHI
SLLSELAPSELLDEIKKKKSHQYKERDWERLESLMYDKFKLQFHDTQILLGNNVRDTMKQ
LHQENSENPAHVIDRINMDFLVEISILPEAYSLTKFKVTGHLPLFSASMSDAKYKLMMQI
IDKSIPNFNFDDDEDIEDLSDPDPALPPSEIFSRPAAVEHDYGFDSDEDKEPDGETSDAQ
SVTSTSTADIGSSTVASSIQANATSESQNIFVFVFKIDKVELSLHRCIDDSTLEQSPLVD
MVMEQFELEYCFRSLEMTADVTLGSLRIEDYIDTKCPSELRQIVSSSNSGDSTSDLFKVK
YRRIKLPIIKKTGEEPSDQIVEVSMSTIRFVVEPKTFLTLLDFIITTFTNPEEAEASDSP
RIEDVEPAAGQDSPQESVAPAGQGSIDVRVDLRSIILILNDEGLQLGTLKLDSALVSVRL
FGETMNIHSRIGGFSLQDDTGETQIPSDSNLNQLISIEGDELADFRYETFDRSRKDLSYN
SSIYFRLGSLRVNVIEKPLSRIIGFASRLLQMKGLYDRARQLAMNQANQIESPDKIRFDV
IIKTPIFFFPTISADSGDKYDSVTANLGEIYLQNKFESVDGVEDVAINNVSAGVRDMKLT
SRFYFEESWSQNLEIIDKIDILFDISKAD
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatggcttgactgctggttctgaagtggcactgccatcagtactgccattcgaa
ccaactgattcttcacttgatccattattgggctcctcagcagccttgtcaaaactgttc
aaactcccactgaatgtgttggagggtcatttaggcgagctggtgttacagattccgtgg
tcgaatttaaagaatcaaccagtcaaagtagttattcaagatgtttttctacttgctgag
cccagattagacgaagactatgaccctgaggaagagtccagacgtgaacaagagctcaag
aaggagcgtttggagcggctagagctgttggagaagtccacaccgtctcaaggatactct
cagcaagatgttcaaaagaatcaaagctttacagagagtttgattaacaaaacaattgag
aatttgcagatcacgattcgcaacattcatattcggtacgaggaccagactagtgtccct
ggtcatccattttccttgggattcaccctggaggagttgtctgccctttcaacagacgac
gaatggaatcccaagttcattcaaagcattactcatgtcacaagaaagctggcgaaactc
aattcattagctatttactggaacacagattcagactcgattcgacgaacttcggatgac
gagtctggagagaaaatgttggacaacttccgaactatgattatttccaaagaaaaggca
gagcgaaaccaatacattttaaagcctgtatctggtattggtagaatcacacttaacaag
ttcccgagcgactcacaaccaaagtctaaggttcagctcatttttgacgaactgggcttt
gtattcgatagcgatcaatatagggatgctttgtggactgcagatttgtttagactttat
atgaattcgaaggaattcaagcgatttagaccaactgttagtgttaaagaagatccaaag
gcatggttcaagtacgctgctgaggcagttcgtagtcatattcatgaaaagaacaagccc
tggaactgggactatctcactatgaggttgcaaattagaagacgatacattgacctgtat
aaattacggacaaagagctctccccctggtacgctatcaaacccagatgagcaggcggag
ttcaaacaacttgaatttgatcttagcttcgaggatatcaagttttatcgatctctggca
aaggctgagctgaggaaagaacaagctaaggtcaaagaagaaaagaagagaacaatcctc
ggtggtacttcacagtcagattctggctcagcagcgcctgcagcaagctggacttcatgg
atttggggaggtggtgccaaaaatgctaatcaagcttcaaatggagatgacgaagtcact
atgactgaagaacagcgaaaagagctgtacgatgttattgagtgggatgaaaaggctgct
gtggaaaagtccgtcactgtcccacagaatcaaataactctagaagtagagacggctctc
gagtctggtagtttcactattagaaacgatcctcacggggcgtcccacgatgttgcagct
gtgtatttcaatggtttcaaggcgcagtttttacaaaggccaacctctttcttaaccagt
attagcttgcaagaattcagagttgatgacaagagtgaaggaacactgtttaagcagatc
gtaaccgtcaaacctctatcccatgaagatgaccatacccatcacaacgtcgatagtcat
gatagcacgccatcaacagaatcagaatcagctgttacctctggaaattctggtgaaagt
tcagaagatgcatttttctggctgtcatttgagaaaaatcctctcgatgagagcgccgac
tcttcattgcatgtgaaaacaaagagtatcacaattttctataatgcacactttctcgaa
cgtgtggcccgatttttcaaacctcccaaaacgcaccttgaaactatcggtgccattatt
aatgctgctggagctactgtagaaggaattcggaatcagactcgaatcggtcttgaatat
gcattgcaagagcacaagactgccaacgtcaagcttgatttgcaggctcctttgattgtg
attccactggatgtcaccagttggaaatcaccctgtgttattatcgacgctggtcatata
agtctgctaagtgagcttgcacccagtgagcttcttgatgaaattaaaaagaagaagagc
catcaatacaaagaaagagattgggaaagactcgaatctctgatgtatgacaagtttaaa
cttcaatttcacgacacgcagattctccttggcaacaatgtgcgagatactatgaaacaa
ttgcatcaagaaaacagcgaaaacccagcccacgttattgatagaattaacatggacttc
ttggtagagatctccattttacctgaggcttatagcttaactaagttcaaggtaactggc
cacttgccattgttttctgcatcaatgtctgacgcaaagtataagcttatgatgcaaatc
attgacaagagtattccaaacttcaactttgatgacgacgaagacatcgaagatttatct
gacccagatccagctttgcctccatctgagattttctctcgacccgctgctgtagagcat
gactatggttttgactctgatgaggacaaagagcccgatggtgaaactagtgatgcccag
agcgtcacatcgacatcaacagctgatatagggtcctcaaccgttgccagttctattcaa
gcgaatgctactagcgagagccaaaatatctttgttttcgtgttcaagattgacaaagta
gaactttcactgcaccgttgtatagatgattctacacttgaacaatcaccactcgtggat
atggttatggagcaatttgaacttgaatattgtttcagatcgttggagatgactgctgat
gtcacattgggtagcttgcgtattgaagattacatcgatactaagtgtccctctgaattg
cggcagattgtatcttcgagtaattcgggagactctacgtctgatcttttcaaagtaaaa
taccgcagaatcaagcttcctattatcaaaaagactggggaagagccatcagaccagatt
gtcgaggtctcaatgtctaccatccggtttgtggttgaaccaaaaacattcttaactctt
ctcgactttattattactacatttactaatccggaagaggcagaagcgagtgatagccca
cgaatcgaagacgttgagccggcagccggacaagactctccacaagaatctgttgcccca
gccggccaaggtagcattgatgttcgagtggacttaaggagcattattttaattctgaat
gatgagggcctacaactgggtacattaaagcttgatagtgcgctagtgtctgtcagacta
tttggcgagactatgaatattcattcgcgtattggaggcttttctcttcaagatgataca
ggcgaaacccaaattccaagtgattcaaaccttaaccagcttataagtattgaaggtgat
gagctagccgacttcagatatgagacttttgatagaagtcgaaaggacctttcgtacaac
tcttctatttatttcagacttgggtcgctcagggtaaatgtgattgaaaagccgttatcc
cgtataattggatttgcttctaggctacttcaaatgaaaggtttgtacgatagagctaga
caattggcaatgaatcaggcgaatcagatcgagagtccagacaaaattagatttgacgtc
atcatcaagacccctatctttttctttcctactataagtgcggacagcggagataagtat
gattctgtgacggctaacttgggtgagatatatcttcaaaacaagtttgaatcagttgac
ggcgttgaagacgtggccattaataacgtttctgccggggttagagacatgaaactcaca
tcaagattctactttgaagaatcttggtcgcaaaaccttgagattattgacaaaattgac
attctgtttgatatatctaaagctgactga
DBGET
integrated database retrieval system
