Sugiyamaella lignohabitans: AWJ20_2095
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Entry
AWJ20_2095 CDS
T05270
Symbol
PAN2
Name
(RefSeq) Pan2p
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_2095 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_2095 (PAN2)
Enzymes [BR:
slb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
AWJ20_2095 (PAN2)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AWJ20_2095 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
AWJ20_2095 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
RNase_T
PAN2_N
UCH
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
30033968
NCBI-ProteinID:
XP_018736979
UniProt:
A0A167EV86
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All DBs
Position
B:complement(368795..371680)
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AA seq
961 aa
AA seq
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MLSNVTKMKRDSQAIALGLASGSVDVVDPNSLQVVKTFNSHSGPISDLDCRQHIIMTCGT
SLRKQGYVPDPLVNCYDLRAMKPLPPIPFPAGAAYIKIHPKMSTCCIIASQSGQLQFADS
ANPTSVFIHQAAITSPLTSLELSPSGDYLSLTDEEGYIHLWSNTVNPSASFSEFSAPLDF
PTSQDPPLHFGVDDDVSLATVGMPYYKEELLSSWSNEDMVFKLGMPSPKIDRSILAGMKV
VDYVGYGSYKKTREPRNMAQKYISLDSNRRSSITVPRFISEKERTGEIDDESAIFDDDVR
DDDKRPNGKTNTQAPSSRKITKMYRRLEIKYSKFGVNDFDFDFYNKTQYAGLENQAANTY
CNSILQLYRYSKYMYNFALKKLAVATTVERVSLLSELGFVFDMLHLAGGKHCCTANFVNA
LSSIPEAVALGLVFDDMVPNLDQPGLVLQKFKTFLMEQIVKNEKYQTLSVENQLQNVHSN
PAALATLPSEFESSVAGIPVSTSIRCLSCGTDSIKKSTIYELDLQTEYGFRNNSSAGPGP
NTANFDSLFFKALNSSLDKTNKVRGWCDVCRKYQQLVTTRSATKLPQVLNVNINIFPEAD
TSVSRQIWASPHWPPTEFFTDNHSRRLVANHRVGKDKYELLGCVVEISRPGHSDHHLVSV
VKIDEAWYLFNDFLVKQIPEKDALDFSLAWKTPVLLVYQLANEMPKEFDYGSWKQTLDTS
ILYKDFFTAGNREEVRREYELLTLEEAPKPGTLVAIDAEFVMLQNEETEIRSDGTKSIVK
PRSLSLARVSVVRGEGPKEGVAFIDDYIATTDTIVDYLTEFSGIEPGDLDPALSKRGLVS
LHTAYKRLWLLLQLGVTFVGHGLSNDFRTINIQVPANQVIDTLDIYFVRARQRKLSLKFL
AWYLLDENVQTGNHDSIEDARTALHLYKKHQQLLRDGTFDATLAKVYSEGHKYNFRPPAN
S
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgaatgttacgaaaatgaaacgagatagccaagccatagcacttggtttagca
tctggctcggtggatgtggtggatccgaatagtttacaggttgtaaagacgttcaattca
cattctggacccattagcgatttggattgtagacaacatattattatgacatgtggaacc
agtcttcgaaaacagggatatgttccggatccactggtcaattgttatgatctcagggct
atgaaaccattacccccaatcccatttcctgctggtgctgcttatataaagatccatcct
aaaatgtcgacttgttgtatcatcgcctctcaaagtggacagttgcaattcgctgattcg
gctaatccaacaagtgtatttattcatcaagcagccatcacatctcccttgaccagttta
gaactatcaccttcgggagattacctgtccttgaccgacgaagaaggatatatccatcta
tggagcaacactgttaatcccagcgcatcatttagtgaattctcagcccctctcgacttc
ccgacttcacaagaccctcctctacactttggtgtagatgacgatgtttcacttgctact
gtcggaatgccatattacaaagaagaactgctttcttcttggtcaaatgaagatatggta
ttcaagctaggtatgccctcgccaaaaatcgatagaagcattttggcgggtatgaaagtg
gtagattatgttggctacggcagttataagaaaacacgagaacctcgaaacatggcgcaa
aagtacatttcactcgattctaatagacggtcgtcaatcacagtaccaagatttattagt
gaaaaggaacggaccggggaaattgatgatgaaagcgctatttttgatgatgacgttaga
gatgacgacaaaagaccaaatggaaagacaaatactcaggcaccgtcgagtagaaaaata
actaaaatgtaccgtcgcttggaaatcaagtacagcaagttcggtgtcaacgactttgat
ttcgacttttacaacaaaacccaatatgctggtttagagaaccaagctgctaatacgtac
tgtaactcaattctccaactgtatcgatattccaagtatatgtacaactttgcgttgaaa
aagctggctgttgcgactacagtagaaagagtcagtttattgagtgagctaggtttcgta
tttgacatgcttcacctagctggtggtaaacactgttgtacagcgaatttcgtgaatgca
cttagttcgattcccgaggcagttgcacttggtctggtgtttgatgatatggtacctaat
ctagaccaaccaggactggttcttcagaaattcaagacctttttaatggaacagatagtg
aaaaacgaaaagtaccagactctttctgttgagaatcaacttcagaatgtccatagtaat
ccagcagcactagcaactctgccatccgaatttgaatcttcggtagccgggattccagta
tcaacatcaatcagatgtttatcctgtggaaccgattccattaaaaaatcaacaatttac
gaactagaccttcaaactgaatacggattccgcaacaattcaagtgcaggaccagggccc
aacacagcgaatttcgactctctcttcttcaaagctctaaactcgtctctagacaagaca
aacaaagtccgaggatggtgtgatgtgtgcagaaaatatcaacaacttgtaactaccaga
tccgccacgaaacttcctcaagtactcaatgtgaatatcaatatattccccgaggcagac
acgagtgtatcgcgacaaatatgggcctctcctcattggccacctaccgagttctttaca
gacaaccactcacgaagactggtagccaaccatagagtaggaaaggacaagtacgagttg
ttaggttgtgttgttgagatttcgcgacccggacactcggaccatcatctggtgtcggta
gtgaaaatcgacgaggcttggtatttatttaatgactttttggtcaaacagattcctgaa
aaagatgctcttgacttttctcttgcatggaaaactccagttctacttgtataccagcta
gctaacgagatgccaaaagagttcgactatggtagctggaagcagactctcgacacgtcg
atcttgtataaagactttttcactgctggtaacagagaagaagtacgacgcgagtatgaa
ctgttgacgttggaagaagcacctaaacccggaactctagtggctattgatgccgagttt
gtgatgttgcaaaacgaagaaacagagattcgcagtgacggtaccaagtcgattgtgaag
cctcggtcactctcccttgcacgagtttctgtagtaagaggagaagggcccaaagaaggt
gtggcattcatagacgattatatcgctacaaccgataccattgtcgactatctgaccgag
ttctcaggaatagaacccggagacctagatcccgccctgtccaaacgcggacttgtatca
ctacataccgcgtataaacggttgtggctccttttacagctcggtgtgacatttgttggc
cacggtcttagcaacgatttccgaacaatcaacatccaggttcccgcgaaccaagtcatt
gatacattggacatttattttgtacgggcgagacaacgcaaactgtcgctgaaattcctg
gcttggtacctgctcgacgagaacgtccagactggtaaccacgactcgatcgaggacgca
cgaaccgctcttcacttgtacaaaaaacaccagcagctgctgagagacggcacttttgat
gctaccctcgccaaagtatacagcgagggccacaagtacaatttccgaccgcccgccaac
tcgtaa
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