Sugiyamaella lignohabitans: AWJ20_2139
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Entry
AWJ20_2139 CDS
T05270
Symbol
SYF1
Name
(RefSeq) Syf1p
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AWJ20_2139 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_2139 (SYF1)
03041 Spliceosome [BR:
slb03041
]
AWJ20_2139 (SYF1)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
AWJ20_2139 (SYF1)
Spliceosome [BR:
slb03041
]
Complex B
Other components
Prp19-related factors
AWJ20_2139 (SYF1)
Complex C
AWJ20_2139 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Mad3_BUB1_I
TPR_2
TPR_8
MIT
ARM_TT21
ARM_TT21_4th
QIL1
Motif
Other DBs
NCBI-GeneID:
30034017
NCBI-ProteinID:
XP_018737019
UniProt:
A0A167EWH6
LinkDB
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Position
B:complement(504214..506610)
Genome browser
AA seq
798 aa
AA seq
DB search
MSTELSLIQEDDILYEQEILKQPGELGPWLRYLEFTADAPISKRIFVFERACDLFKRSYK
LWKMYLDIRVDYVARSHAWILSQQGLNEFSREQLKSEIEKVDRLYVKALVLLNKMPRLWQ
DYLEYLLRWKPHSITHIRHTFDNALRALPLSQHHRIWPLYINFANRHAHISSATAKNIWL
RYILFFPDETENCIEQLIDLEYYEQASQLLTKLLNNPNYVSVKGKSRHQLWEELADILVV
PHDNWKPDSFYVERVIKSGIKRYPDQKGKLCVQLATYWINNGNFEKARDVFEQGLEDVKT
VRDFSQIFDSYCEFEESLIAKLMDEEEQGDLDRLMESFEQLMDRRPFMINSVLLEQNPNN
VVEWEKRAGLWGSSMDQVVQTYEKAIETIVPKKASGKLYQLWTNYAKLYEKAGDLSTARI
IFDKATKVPYKSVNELCDLWIEWAEMELRSENLDGAIKIMETATKGPKNSKVDYFDESLS
PQERLHKSMKLWSFYVDLVESIGTLEEVKPIYDRIFELKIGTTLTIVNYANLLEENNYFE
EAFKVYERGIEMFSYPISFEIWNIYLQKAIKRKLGIERLRDLFEQALEDCPSKLCKPLYL
LYGKLEEERGLVSNAIKIYERATKAVDNKDKLETYRYYIARVAENFGLPGTRPIFQTAID
NLNDHDANIIGQEFIKIEEKLGEIDRVRVLYGFLSQFNDPRTNEEFWSKWDQFEVMHGSE
DTYKEMLRIKRSVIAQFNTDANYLAAKVSDNNSMSRLDKQTASPIGFVASETLQPSKSEA
IDTNDVENPDAIDIEIED
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgtctacggaattgtctctgatacaagaagatgacattttatatgagcaagaaatcctc
aaacagccaggagaactgggaccatggctgcggtatctagaatttacggctgatgcgccg
atatcgaaaagaatcttcgtgtttgagcgagcttgtgacctcttcaaacgatcctacaaa
ctttggaaaatgtatttggacatcagagtcgactatgtcgctcgatctcacgcatggatt
ctatcacagcagggattaaatgagttctcaagagaacagttaaagagcgaaatagaaaag
gttgacaggttgtatgttaaagcactcgtactcttaaacaaaatgcctaggctatggcaa
gactatttagaatacctgcttcgatggaaaccgcatagcattacccatattagacatacc
tttgacaatgcactcagagcattgccgttgagtcaacatcacaggatatggccattgtat
atcaatttcgcaaacagacatgcacatatatcttcagctacagcaaagaatatctggcta
agatatatactattcttcccagacgaaacggaaaattgtattgaacaactcatagattta
gaatattatgagcaggcttcccaattgcttacgaaactcctgaataatccgaactatgtc
tcagtcaaaggtaagagccggcaccaactatgggaagaactggcagatattctggtagta
cctcatgataactggaagcctgatagcttctatgttgagagagtcattaaaagtggtata
aagagatatcccgatcaaaaagggaaactgtgcgtccaacttgctacgtattggatcaac
aatggaaattttgagaaagctcgtgacgtattcgagcaaggattggaggatgtgaaaact
gtgagagatttttctcaaatatttgatagttattgtgaattcgaagagtcactgatagct
aaactaatggacgaagaagaacaaggtgatcttgacagattaatggaatccttcgagcag
ttgatggataggagaccatttatgattaacagtgttctacttgagcagaatccaaacaat
gtagttgagtgggaaaaaagagctggtttgtggggaagttctatggatcaagttgtgcaa
acatacgagaaggccattgagactatcgtgccgaagaaggctagcggaaaattatatcag
ttatggaccaattatgctaaactgtacgaaaaagctggtgatctgtccacggcccgtata
atcttcgacaaagctaccaaagttccatataaatcagtcaatgaactctgcgacctttgg
attgaatgggctgaaatggaactgagaagtgagaatctagatggggcaataaaaattatg
gagactgctacgaagggacctaagaattctaaagtagattacttcgatgaatcgctttct
ccacaggaacgcctccataagagtatgaaattgtggtccttctacgtcgatttggttgaa
agtattggcacattagaagaagtaaaacccatatacgatcgcatttttgagcttaaaatt
ggaactacattgactatagttaactatgccaatctgttagaggagaataattatttcgaa
gaggctttcaaggtttatgaaagaggaatagaaatgttttcttaccccatttcattcgaa
atatggaatatttatttacagaaggcaatcaagagaaagttgggaatagagaggctgcgt
gatctgtttgagcaagcactcgaagattgtccttctaagttgtgcaaaccactatattta
ttatacggcaaactggaagaagaacggggactggtcagcaatgcaatcaagatttatgaa
agagcaaccaaagctgtcgacaacaaagataaacttgaaacgtataggtattatattgct
agagtggcggagaatttcggtttgccaggtacccgacccatattccagacggctattgac
aatcttaatgatcatgatgccaacataattggacaggaatttattaagattgaagaaaaa
cttggcgagatagatcgtgtacgtgtgttatatggatttttgagtcagttcaacgatcct
aggacgaatgaagaattttggtctaaatgggatcagtttgaagtcatgcatggctccgaa
gatacatacaaggagatgttacgaatcaagcgatctgttatagcacaattcaatactgac
gctaactatttggctgctaaagttagtgataacaattcaatgtcaagactcgacaagcaa
actgcttccccgattggatttgttgcatcggagacactacaaccatcaaaatctgaagcc
attgacactaatgacgtagagaaccctgacgctatcgacattgaaattgaggattga
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