Sugiyamaella lignohabitans: AWJ20_2620
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Entry
AWJ20_2620 CDS
T05270
Symbol
CSL4
Name
(RefSeq) Csl4p
KO
K07573
exosome complex component CSL4
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_2620 (CSL4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_2620 (CSL4)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AWJ20_2620 (CSL4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
AWJ20_2620 (CSL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
Motif
Other DBs
NCBI-GeneID:
30034552
NCBI-ProteinID:
XP_018737478
UniProt:
A0A167F9Q0
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Position
B:complement(1954033..1954860)
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AA seq
275 aa
AA seq
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MTLPGYVVPGQIISPLIEKEGNVVRRYKPGHGVVERDFGNVKALSATLVGKIQIVSLDGK
KEDDIVMVDDEDLENDKKSKVKGKPTELVFQINIENKFNYGSSDNVSSTRVGTSVLPEVG
DIVYAKVVKLTLVQTHVEILVVENQGTISAESGLGVHASADGVVGLPPLASGQGSASSSG
DIAEGFGGIIRIQDVRATQRDKVKIQESFKPGDIVRALVLSLGDGNNYYLSTARNDLGVI
FAKSAAGEHMYPIDWQTMKSSVTGALELRKCAKPF
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgactcttccaggctatgttgttcctggccaaataatctcaccactgattgaaaaggaa
ggaaatgtcgttcgaagatataaaccaggccatggtgtagttgaacgcgattttggcaat
gttaaagctctctctgctactttagtaggaaagatccagattgtatctttagacggaaaa
aaggaggatgacatagtgatggtagatgatgaagatttagaaaatgacaaaaaaagcaag
gtcaagggcaagccaacggaattagtattccagatcaatatcgaaaacaaatttaattac
ggcagttctgataacgtatcaagcacccgtgtaggcacatctgtgcttcccgaagttggc
gacattgtctacgccaaagttgtcaagctcactcttgttcagactcacgttgaaatcctt
gttgtggaaaatcagggaacaatatctgccgaatctggccttggagttcatgcctctgcc
gacggcgtcgtgggactaccgcctctggcatctggacaaggcagtgcttctagttccggt
gatattgcggagggtttcggaggtatcattcgtattcaagatgttcgtgctacccaaaga
gataaggtcaagatacaggagtcttttaaaccaggtgatattgtccgtgcgttagtgctt
tcgttgggtgatggaaacaattattacctctcaactgcaagaaatgatttgggtgttatt
tttgctaaaagcgctgctggtgagcacatgtatcctattgattggcaaactatgaagagc
tctgttactggcgccctcgagttacgcaaatgtgctaaaccattttaa
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