Sugiyamaella lignohabitans: AWJ20_2746
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Entry
AWJ20_2746 CDS
T05270
Symbol
NMD2
Name
(RefSeq) Nmd2p
KO
K14327
regulator of nonsense transcripts 2
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03013
Nucleocytoplasmic transport
slb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
AWJ20_2746 (NMD2)
03015 mRNA surveillance pathway
AWJ20_2746 (NMD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_2746 (NMD2)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
AWJ20_2746 (NMD2)
mRNA cycle factors
P-body specific factors
AWJ20_2746 (NMD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Dor1
NLS_NINJA_AFP
Motif
Other DBs
NCBI-GeneID:
30034691
NCBI-ProteinID:
XP_018737602
UniProt:
A0A167FCQ0
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Position
B:join(2360185..2360193,2360267..2363758)
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AA seq
1166 aa
AA seq
DB search
MTEASDASASQAPPSVSSVRNARRKELRDLNSEVWDGAQDVFPTAKNLDSTLRKNTAFIK
KCRVNLAEDSQAALLNDVRTVSLEKYLSEIIGAICEGFTKAKSSADIFAGVEVASALHQR
FSTQISPQLLAFFFQGISNPSKSHLDSLAPDARLREDQSRIDRHKIVLRVLIELWLVNVF
RFTSDVTQAGLEVPQWALRRTENGVTMPPPLSALQEVLNHDMVDFSGASIAVVILKNYGQ
TLAGVSKPKAGPEASGMVEATKAVTTEKSPLVMPDIQQLFLSTFKNYTKSMQSKLQELAQ
QARKMEKQNGDAYIRTGKILDDRRAGLENLLSKFQSLHDLCTTLSEYLGMTMPEYKVSNE
TQDEVMISLANALDGDDAGLWDDSEQKKFYEDLVDLTYLANTDENENDQKEEGNSTEGNG
AKSEDSDLDSSNRSTNDELDEKDKQLMNELDDIMSASQKTGNLNDNEIENSGDDPEFEDF
AGEQNGEDVSGGEPTAGTRISELLTSLSTQQSRSNVDNMAIEFVALNNKATQNRVLNFLK
SVPVTDQYKLPFYARFIATLDPFCKPISTGVIEYLDSFFRYLQRHRKVRALTSRRMFIIR
YLGELIKFGIVPKHVIFHKLKIMIAHLDAVNVENIFTMFECCGRYLIRKPDTHALMSKMM
QVLEFQKDKKFFPAEIKAMINGAIYYVNPPPKVTFQKERPVIELYIRKLIYYDLSKETSS
AVLIQLKKMDWNDKDTFNSLRKVFTKIWKVKYVNIPYMAWFLASVTSSYRSFVVIIVDSL
LENIRRGLETNDFEFNQKRISEVRFLGELSKYRLAPEDVIYDVLFMLISFGHPNGRPRPG
QFVSLDPPNEFFRIRLVCTLLESNGVYSRINKDTTKFDLLVKFFQYYIFSKDPMSMDIEF
QVRDTFELLGVKFAGSIEEASNELQHALNVYNGIEAKESTVTSSDSRSTNAPDLDEQAEA
DLAAELLAVTEGHSRDNYEIVKPAKPEEPIETEEERLIREEQQRIKNLEAKRINDAKADI
KAMAQVEREFQKLMIDRMDRKADEKTTVFDAPVPSIKDSYDNKPSPSVTSNGSSVGYKLL
TKRVGKPQIVDVNVPADSKFAVNVVTEKSRLRNEQEKIRDFVLNYEYDQNNEPRLRRVIQ
PEVQSTRYSGLKRPTKHAPTLDDVKF
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagcatctgatgctagtgctagccaagcaccaccgtcagtttcttctgttaga
aatgcaagaagaaaagaattaagagacttgaactcagaagtatgggatggagctcaggat
gtttttcctactgctaagaatttggattctactcttagaaagaatactgcctttatcaaa
aagtgtcgtgttaaccttgctgaagattctcaagcagccctattaaatgatgttagaact
gtttctttggagaagtatctttcagaaattataggcgccatttgcgaaggatttacgaaa
gccaagtcttctgcagatatcttcgcaggagtggaagtagcctcagctctgcaccaaaga
ttcagtacacaaatttcgcctcaacttttagcattctttttccaaggtatatcaaatcca
tcaaaatcacacctagattccctagctccggatgccagactaagagaggatcagagtaga
attgaccgtcacaagattgtattgcgggtgttgattgagttgtggttagtcaatgtattc
cggtttacatccgatgtaactcaggccggactggaggtcccacaatgggcactccgaaga
acagaaaacggcgtgaccatgcctccaccacttagtgcattgcaggaagtgttgaatcac
gatatggttgatttttcaggcgcgtccatcgccgtagtaattttaaaaaactatggacag
actcttgccggagtttctaaaccaaaggctggacctgaggcaagtggcatggttgaagca
acaaaggcagtgacgacggaaaagtcacctttagttatgccggatatacaacagttattc
ttgtctacctttaaaaattataccaagtcgatgcaatctaaacttcaagagcttgctcaa
caagccagaaaaatggagaagcaaaatggcgacgcctatattcgtactggtaagatactt
gatgatagaagagctggccttgaaaacttgttaagcaaattccaatctttgcatgacctt
tgcaccaccctttctgagtatttgggaatgactatgccagaatataaagtgtcaaatgaa
actcaagatgaagttatgatcagtttggcaaatgcactggatggtgacgatgcgggatta
tgggatgatagcgaacaaaaaaaattttatgaagatttggttgacttgacgtatttggcg
aataccgatgagaatgagaatgaccagaaagaagaaggaaatagtaccgaaggaaatggc
gctaagtcagaagattcagatttggattcgtcgaatagaagcacaaacgatgaactagat
gaaaaagacaagcaacttatgaatgaactagatgacataatgagtgcatctcaaaaaaca
gggaatcttaatgataatgaaatcgaaaattctggtgatgatccagaatttgaagatttc
gctggtgaacagaatggtgaagatgtaagtggaggagagccgacagctggaacgcgtatt
tccgaactgttgacttcattatctacgcaacagtctcgtagtaatgtggataatatggct
atagaatttgttgctctgaacaataaagcgactcaaaatagagtactcaacttcctcaaa
tcggtgcctgttacggaccaatacaaacttccgttttatgccaggtttatcgccacattg
gatcccttctgcaaacctatttcaactggagttatcgaataccttgatagctttttcaga
tatttgcaacgtcaccgtaaagtcagagcattaacttcaagaaggatgtttatcattcga
tatctgggcgaactgattaagtttggaattgttcctaaacatgtaatctttcataagttg
aaaatcatgattgctcacttagatgctgtaaatgtggaaaatattttcactatgtttgaa
tgttgtggtagatatcttataaggaagccagacacgcatgctcttatgtcaaagatgatg
caagttctggaattccagaaagataagaagtttttccctgccgaaatcaaggcaatgatc
aatggtgcaatttattatgtcaacccacctccgaaagtcacattccaaaaagaacgtcca
gtgattgaactgtacattcgtaaactcatttattatgatctttctaaggaaaccagctcg
gcggttcttatccaacttaagaaaatggattggaatgataaagatacattcaattctttg
cgcaaagtttttacaaaaatatggaaagtaaagtacgtcaatattccatacatggcttgg
tttcttgcttccgttacatcctcataccgatcttttgttgttattattgttgattctttg
ttggagaatattcgaaggggtcttgagacaaatgatttcgagttcaatcagaagagaata
tcagaggttagattcttgggcgagttaagcaagtacaggcttgctccagaggatgttatc
tacgatgtattgttcatgctgatatcttttggccatcccaatggtcggcctcgaccaggc
cagttcgtgtccttagatcctccaaacgagttctttagaatcagactggtttgtactctt
cttgaaagtaatggtgtgtattcacgaattaacaaagatacaactaagttcgacctgctg
gtgaagttctttcagtattacatattcagtaaggacccgatgtcaatggacattgagttt
caagtgagagacacctttgaactacttggcgtgaaatttgcaggttctatagaggaggca
tccaatgagttacagcatgcattaaatgtgtacaatgggattgaggccaaagagtctacc
gttaccagtagtgattctcggtcaaccaacgcaccagatttagatgaacaggccgaagct
gaccttgctgcggagttattagccgttactgaagggcactcaagagataattatgaaata
gtcaagccagcgaaaccagaagaacctattgaaacggaagaggagcggttgataagagaa
gagcagcagagaataaagaatctggaggccaagagaataaatgatgcgaaggcagatata
aaagctatggctcaagtggaaagagagtttcaaaagctgatgatcgatcggatggatagg
aaagctgacgaaaagacgacagtgtttgatgcacccgttccgtcaataaaagatagctat
gacaataagccgtccccatcagttacctccaatggttcgtcggttggctacaagttgctt
accaaacgagtaggcaagccccaaattgttgatgtcaatgttcctgccgattctaagttt
gctgttaacgtggtaaccgaaaaatctcgtctgagaaatgagcaggaaaagattcgagat
ttcgttttaaattatgaatacgatcaaaataacgaaccaagattgaggagggttatacag
ccagaggttcagtccacaagatattctggattgaagcgtcccaccaaacatgcacccacg
cttgacgatgtcaagttttaa
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