Sugiyamaella lignohabitans: AWJ20_2851
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Entry
AWJ20_2851 CDS
T05270
Name
(RefSeq) RNA-binding splicing factor
KO
K13103
tuftelin-interacting protein 11
Organism
slb
Sugiyamaella lignohabitans
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slb03041
]
AWJ20_2851
Spliceosome [BR:
slb03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
AWJ20_2851
Other components
Complex C specific factors
AWJ20_2851
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GCFC
G-patch
G-patch_2
STX6_10_61_N
ZUO1-like_ZHD
DUF7646
Motif
Other DBs
NCBI-GeneID:
30034808
NCBI-ProteinID:
XP_018737703
UniProt:
A0A167FFC5
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All DBs
Position
B:2624301..2626889
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AA seq
862 aa
AA seq
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MSSSSEYNSSEDEYNGLGSSSRRSRNKRNRFDSGSDEEDEDLGAKRSRFKPMSFTSGATL
EPETMNHIESRSENQFAKGSGEKQYNSSAKKGEESRSGREDRVESESSEHEDGLQEIRGF
GSMNNFFAQAMGQTQSSGNNEEMSSDNESEDQAQGKPALASFGSSAKRNSKIDLTSKKGS
HYISSYGIGAKLLGKMGYVPGKGLGADGKGIVEPVQQKLRPTKLGLGGIDEKTKQSKKVD
AEKADIERRTAKGSEGSQFKKGIATKDIYEMITRLESEGLRVPTAYETLISMTKEYRTDS
NNEVKSSIFGLQEQAMTQLRKYYRAWATMKSTREYAKYELVQVRAKLEKLIDDIADLRSA
IEVVDEINKFHLVKSMDNSSLIDEKLASLLDKLQFEFISQLDSLQLDQFAVAVIKPHFTE
FVDEWKPLDEPSAFRDYFLRWNLLLSIERLDKNSEESTSLSAANFLLPVSERNGSSNNEQ
VPARKRRGTHFESLLYNVWYPKIESVLSHEWDVTHPGPAILLLEEWEAVLPEFVKMVVLR
GVVFPRLKDAIDRWQPLSESKHDDHSEPHIWIFPWLPYLGGSYEAVMLEIIGLMKAKFAF
LIKEWLSKPRRAVPFEELTSWRQLIGEQEMDDLLQLTLVPGLRRYLSQELEINPAEQVLT
PLEAVVKKWGRVLSPSITSSILEKEFFPKWLNVLHSWLVEPNAKLEDISSWYQAWSMWFP
QSIRDTIAVEEGFRKGLDLINDALDLNPKERYKLEHPTKAASPAPRPEYYKPVYDDVTSS
SDYKPKSTFRDVVEEYCLEHDVFLVPQKKSHPTLGHRLYRVSHDPSGKTGPWCYFDEDVI
WIRRKSSEEYEPIDVDDLTSFL
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctccagtgagtataattcttctgaggatgaatataatgggctgggcagctca
tctaggaggtcaagaaataagaggaacagattcgacagcggaagtgatgaagaggacgag
gaccttggtgcgaaacgcagccgcttcaaaccaatgagctttacttctggggcaacatta
gagcctgaaactatgaatcatatcgagagtcggagcgagaaccaatttgctaaaggatct
ggtgaaaagcagtataacagttctgctaaaaaaggtgaagaaagccggtcaggacgtgaa
gatcgggtcgagagcgaaagctcagagcacgaggatgggttacaagaaataagaggattc
ggcagcatgaataactttttcgcccaagcaatgggtcagactcagagtagtggaaataat
gaagagatgtcaagtgataacgaaagtgaagaccaagcacaaggaaaacctgcgttggca
tcatttggttcgtcagcgaaacgaaattcaaagattgatctcacgtctaaaaagggttca
cattatatatcttcttatggaattggagccaaacttctaggtaaaatgggttatgtgcct
ggtaaaggtttgggtgcagacggtaaaggaattgtagaaccagtccagcaaaaattgcgg
cctacaaagcttggtctgggtggtattgacgaaaagacgaagcaatctaaaaaagtggat
gccgagaaggctgatatagagagaagaactgcgaagggttcagaaggaagtcagtttaaa
aagggtatagcgacaaaggatatatatgaaatgatcacaagactcgagagtgaaggtcta
cgagtgcccaccgcatatgaaactctgatctcaatgacaaaagaatatcgcactgactct
aacaatgaagttaaatcgagcatttttggacttcaagagcaggctatgactcaattgagg
aaatattatcgagcatgggccacaatgaaatccacaagagagtatgcaaagtacgaactt
gttcaagtcagggcgaagcttgaaaagctgatagacgacatagctgatttgaggtcagcc
attgaagtggtggacgaaattaataaattccaccttgtcaaatcaatggataacagttcc
ctaatagatgagaaactggcaagtcttcttgataaattgcagttcgaatttataagtcaa
ctggactcattacagttagatcagtttgcagttgccgtaataaagccacattttacagaa
tttgttgacgaatggaaaccgcttgatgagccgtcagcatttcgagattattttttgcga
tggaatctattactttccattgagaggttggataagaacagtgaggaatccactagctta
tcagccgccaattttcttttacctgtctctgagagaaacggctcgtctaataatgagcaa
gtacctgctcggaagcgtaggggaacacattttgaaagcttgctgtataatgtctggtat
cccaaaatagagtccgtcctgtcccacgaatgggatgtgacacatcctggacctgcaatt
cttcttcttgaagaatgggaggcagtgttgccggagtttgtgaaaatggtcgttcttcgt
ggtgttgtatttccaaggctaaaggatgcgattgacagatggcagcctttatctgaatct
aaacatgatgaccattcggaacctcatatatggatttttccttggctgccttacttggga
ggctcttacgaagccgtcatgctagaaattatcggattgatgaaagcaaaatttgcattt
ttaataaaagagtggctcagcaaaccgagacgtgctgtgcctttcgaagagttaacgtca
tggaggcaacttattggagaacaggaaatggatgatctgttgcaattgaccctagttcca
ggtttgcggcgatacctgtctcaagaacttgaaatcaaccctgctgagcaggtgttaact
cctctggaggctgtcgtgaagaagtggggcagggtccttagtccaagcatcacaagctca
attcttgagaaagaattttttcctaaatggttaaacgtcttacacagttggctcgtcgag
cctaatgcaaaattagaggatatatcatcctggtaccaagcatggagcatgtggttcccg
caatccatacgagatacgatagctgtagaagaaggattccgcaagggtctagatctcata
aatgatgcccttgatttgaaccccaaggaacgatacaagcttgagcatcccacgaaagca
gcatccccagcgccccgaccggagtactataagccagtctatgatgacgtgacatctagc
tccgattacaagccgaagagcacattccgtgatgtggtagaagaatactgtttagaacat
gatgtcttcctcgtaccgcagaaaaagtcacatccaacactaggacaccgtctctaccga
gtcagccacgatccttcaggcaagactggcccttggtgctactttgacgaagacgtcatc
tggattcggcgtaaatcctcagaagagtatgagccaattgatgttgatgatttaactagc
tttctatga
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