Sugiyamaella lignohabitans: AWJ20_3361
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Entry
AWJ20_3361 CDS
T05270
Symbol
RRP6
Name
(RefSeq) exosome nuclease subunit RRP6
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_3361 (RRP6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_3361 (RRP6)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
AWJ20_3361 (RRP6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
KinB_sensor
Motif
Other DBs
NCBI-GeneID:
30035375
NCBI-ProteinID:
XP_018738198
UniProt:
A0A167FUJ0
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Position
B:complement(4011988..4014420)
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AA seq
810 aa
AA seq
DB search
MSEDQNKKVLSALISTIRNASKVASQDIAFYKSLDKTLEQSSEEVSNRLLGLVNRLVASV
SPGEVETLTVAQDINTHWKDLSNVIDTLFEKTDISLDALKKSKSGSSVQKNGIAIGSNAK
EATKKVDGAASDSVIHHSKDLPKPQLNFKRPINNSKNLPFKPLLTSKPHSLVPFDESIKF
VDGELEEDSDNTQLASHYSQPYENEIANQPYPDMIVRDPIPSKSWEGTEAIYVDTVETLQ
GMLEELKKSSEIAVDLEHHDYRSYYGIVCLMQISNRQTDWIVDTLVLREELQILNEVFTD
PNIIKVLHGAYMDIMWLQRDFGLYIVSLFDTFCASKALGLPKHGLAYLLETHANFLTSKK
YQLADWRIRPLPSPMLSYARSDTHFLLNIFDQLRNRLVANDILHIVLKESREVAGQRYEY
PGYGHSIEDQCQSILIKYRLSRSQQIVLRDLYEWRDNVARRADESQRFIVPNHFLVGLSI
SQPTTVAGILSVSSGVTSHVRASAVELAKIIESSKARIEDDLEEETQVSNDEPHMVSDVS
TVEDYDQYIEKYEAVVERQKGLFSSSRIGSALEKLRDTQSKFFTCIINPASLDPVTYSKR
SQMVRDRLDLYVSVPPDSDMSDIDIEGDLDEEIGVSSGVGTEANGETEVMETLETAVSED
NVNESSDIFESSDSNKRKDREVDIEEGALITIKKKTKRSKRRKLKVLDEKEVEGDENLDG
TRYEETDQSAQSFGDVPFNAFDFKSAPAVLNKPQKAVDKRKLAKDKQRGRKDTSSVAFNP
YGDVSDATPKGARRISRPSGGQTFTFKKKR
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagaccaaaacaaaaaagtgctgtctgcgcttatttccacgattaggaatgcc
agtaaagttgcatctcaggatatagcattttataagtccttagacaagactcttgagcaa
tcttcagaagaggtttctaacaggctacttggtttggtaaatcgtcttgttgcgagtgtg
agtccaggcgaagtagagaccttgacagttgcccaagatatcaacacacattggaaggat
ctaagcaacgtaattgatactttgttcgagaaaactgatatttctttagatgccctgaaa
aaatcaaagagtggcagcagtgttcaaaagaatggcattgcaattggctcgaatgccaaa
gaagcgaccaagaaggtagatggtgccgcttcggatagtgtcattcatcattccaaagat
ttgccgaaacctcagctgaattttaagagaccgatcaacaactccaagaatcttcctttc
aagccgttattaacctcgaagccacactctttagttccttttgacgaatctatcaagttt
gtcgatggtgaactagaagaagactccgataatacccagctagcatctcattattcacaa
ccctacgagaatgaaattgctaaccagccatatccagatatgatagtacgtgatcctatc
ccttccaagagctgggagggtacagaggctatttatgtcgacaccgttgaaacattgcaa
ggcatgttggaagaattaaaaaaatcttcagaaattgctgttgaccttgagcatcacgac
taccgatcgtattatggaatcgtctgtttgatgcaaataagcaaccgccagactgattgg
attgtcgacactcttgttctacgtgaagagctgcaaatactgaatgaggtgtttaccgat
ccaaacattataaaagttcttcatggtgcctatatggatatcatgtggctgcagagagat
tttggtctgtacattgtcagtctatttgacacattttgtgcttccaaggcccttggacta
cctaaacatggtcttgcttatttattagaaactcatgcaaattttttgacttccaaaaag
tatcaactggctgactggaggatcagacctctcccgagtccaatgttaagttatgcaagg
tctgatactcattttttgctcaacatttttgatcaactgcggaatagattggttgccaat
gatatacttcatatcgtcttgaaggaatcgagggaggtagctggtcaaagatatgagtat
ccaggatacggccacagtatagaagaccagtgtcaatccatattgatcaaatacagacta
tctcgcagccagcaaattgttctcagagatttgtatgaatggcgagacaatgttgcacgc
cgagcagatgaaagtcagaggtttatagttccaaaccactttttggtaggattaagcatt
tcacaacccacaaccgtagctggtattttaagtgtatccagtggtgttacaagtcatgtc
cgcgcctcagctgtcgaactggctaagattattgaaagctcaaaggctcgaattgaagat
gatctagaggaggaaacacaagtctctaatgatgagccccacatggtttctgatgtcagc
actgtagaggattatgatcaatacattgagaaatacgaggctgttgtagagagacaaaaa
ggattgttcagtagtagcagaattggatctgcccttgagaaactgcgggacacccaatca
aaattttttacttgcataattaatccagcatctcttgatcccgtaacatattccaagcgg
tctcagatggtcagggataggttggacttgtatgtgtctgtaccacctgatagcgatatg
agcgacattgatattgaaggagatcttgacgaagaaataggggtcagctctggggttggt
acagaggcaaatggtgaaacagaggtgatggaaactcttgaaacagcagtttctgaggat
aatgttaatgagtcgagtgatatctttgagtcttcagattctaataagcgtaaagatcgt
gaggttgatattgaagaaggtgcgctaataactatcaagaaaaagacaaagcgatcaaag
cgtcgaaagctcaaggtcctggatgaaaaagaggtcgaaggtgatgaaaacctagatggc
acacggtatgaagaaacagatcaaagcgcccaaagctttggagacgttccctttaatgct
tttgatttcaaatctgccccagctgtgctcaacaaacctcaaaaggctgttgacaaaaga
aagcttgctaaagacaagcaacgtggccgcaaggacacatcaagcgtagctttcaatcct
tacggagatgtttctgatgcaacaccgaagggggcgcgcagaatctccaggccaagtggt
ggccagacattcaccttcaaaaagaagcgctag
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