Sugiyamaella lignohabitans: AWJ20_3845
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Entry
AWJ20_3845 CDS
T05270
Symbol
CDC4
Name
(RefSeq) SCF ubiquitin ligase complex subunit CDC4
KO
K03361
F-box and WD-40 domain protein CDC4
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb04111
Cell cycle - yeast
slb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
AWJ20_3845 (CDC4)
09140 Cellular Processes
09143 Cell growth and death
04111 Cell cycle - yeast
AWJ20_3845 (CDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slb04121
]
AWJ20_3845 (CDC4)
Ubiquitin system [BR:
slb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
AWJ20_3845 (CDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_DCAF4
F-box-like
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF12
WD40_like
WD40_MABP1-WDR62_1st
F-box
Beta-prop_Nup120_160
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_LRRK2
Beta-prop_VPS8
DUF7347
Motif
Other DBs
NCBI-GeneID:
30035911
NCBI-ProteinID:
XP_018733526
UniProt:
A0A167C056
LinkDB
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Position
C:complement(437248..439506)
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AA seq
752 aa
AA seq
DB search
MSEQDPLSLGHISRPAVAEQSFAAVMSGSNGSAGSGSVNEPSGHSSIASSSSSAIIDHFN
EEFKSPLTPAPSPTAHHHYSYSNSSSPNTSSHSPNSRNFHQLQQEWNLDESQHYNYHLHQ
LRSRRTGGGRLDSVVGQDFPSAHDDYQKESSTSKALSLVESVRSQFGSLDDEGRSLFLGE
LLAMCGRAVLSETLDYISPMLKRDPMVVLPSELALKVLSYVDDPLSLARASQVSKTWYLM
ISDDLTWKELCKTHHFRRLSAAVNVAMSGDNLRGRVPSVVGVNSGIHPGTVVPGSSPTGS
VSGQSDLTEAFYNPNATKRPVPTSYRSHFKQQYLLNSAWASGGRLAAKYVISIPGVVTSL
LMEGQYIVIALDNSKIFVFREDGRLLRALFGHVMGVWALALRGHTLVSGGCDRDVRVWDL
RSGGCSQILKGHSSTVRCLQMVDEDTAISGSRDATIRIWDVKKGICKRVLEGHDASVRCV
EVHGDICVSGSYDFTAKVWRISDGTLLHTLVGHISQIYSLAFDGKRIATGSLDASIRIWD
PETGLCLAFLQGHTSLVGQLQMKGNILVSGGSDGAIRVWDLENYTCLQRFTAHDNSVTTL
QFDEERIVSGGSDGKVEVWELATGKHIRSLSGPFDAVWRVAFKDEKIAILASRQNMIHME
LMSFTPTVDRADSTATPPTIEFRSTDGYGRRRGHSTKPSDDPGMSPTMVPVGRESPEHTM
TDRPSGTVVTAPTAAATPGQPRQDDDAMDISA
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaagacccattatcgctggggcatatttctcggccggctgtcgccgaacaa
tcatttgctgctgtcatgtcaggttccaatggctctgctggctctggctcagttaatgaa
ccctctggacactcgtcaattgcctcatcatcatcaagtgctattatcgaccattttaat
gaggagttcaaatcaccattgactccagccccttcgcctactgcacaccatcactattca
tattccaacagtagctcgccaaatacctcgagccattctcctaatagccgaaactttcat
caattacaacaggagtggaacttggacgagtctcagcattataattatcatttgcatcaa
ctgaggagtcgtcgcactggtggtggaagacttgactcggtcgtgggccaggatttccca
tctgctcatgatgactaccaaaaagaatcttcaacaagtaaagccctgtctctagtcgaa
tcggtacgatcgcagtttggctcattggatgacgaaggtaggtctctgtttcttggtgag
ctcttggctatgtgtggccgagccgtattatcagaaactctggattatatctcaccaatg
cttaaacgggatcctatggtggtgcttcctagtgaactagcactcaaggtcttgtcatat
gtcgacgatccactgagtctcgccagagcttctcaagtatctaaaacctggtatttgatg
attagcgatgacttgacttggaaagaactgtgtaaaactcatcatttccgtcgattgtct
gctgctgttaatgtagctatgagtggtgataatcttagaggcagggttcccagtgttgta
ggggttaattctggcattcatcctggaactgtggtacctggttcttcaccaactggctct
gtatctggacaaagtgatctgaccgaggccttctataatcccaatgccactaaaagacct
gttcccacttcttatagatcacacttcaaacaacaatatttattaaactcggcctgggct
tcgggaggcagactggctgctaaatacgtcatttcaatacccggcgtggttacttcgctg
ttgatggagggccagtatattgtcattgccttggacaattcaaaaatttttgtatttaga
gaagatggcaggctattgagagctttgtttggtcatgtaatgggtgtatgggcattagct
ctaaggggtcacaccttggttagtggtggttgtgatcgagacgttcgagtatgggacctg
aggtctggtggttgttcacagatcctcaagggtcattcatcaactgtcagatgtttacaa
atggttgatgaggatactgctatctccggttctcgagacgctactattcgtatctgggat
gtgaaaaaaggtatttgcaaacgagttctcgagggtcacgatgcttcagtgcgatgtgtc
gaggtccatggtgatatttgcgttagtggaagttacgactttactgccaaagtgtggagg
atatctgacggtactctgctccacacattagtgggccacatttcacagatctactcactg
gcttttgatggaaagcgaattgctaccggttcattagatgcttcaatccgtatttgggat
ccagagaccgggttatgtttagcgtttctccagggtcatacctcactcgtaggacaactt
cagatgaagggcaatattctcgtcagtggaggttccgacggtgctatcagagtatgggat
ctggaaaattatacttgtctgcagagatttactgctcatgataactctgtcactacatta
cagtttgatgaagagcgaattgtaagtggcggtagtgacggtaaagtcgaagtttgggag
ctggcaactggtaagcacattcgtagtctttctggtccatttgacgctgtatggagagtt
gccttcaaggacgagaaaatcgccattctggcctcgcgacagaacatgatccatatggag
cttatgagtttcacgccgactgtcgaccgagcagactccactgctacccctcctaccatt
gagtttaggtcaactgatgggtacggacgtagacggggccactctaccaaacccagtgac
gaccccggcatgtcacccacaatggtccctgtcggccgcgagtcccctgaacacaccatg
actgaccgtccgtccggcacggttgtcacagccccaactgctgctgccactcccggccaa
ccccgccaagacgacgatgccatggacatctctgcttag
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