Sugiyamaella lignohabitans: AWJ20_4011
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Entry
AWJ20_4011 CDS
T05270
Symbol
RFA1
Name
(RefSeq) replication factor A subunit protein RFA1
KO
K07466
replication factor A1
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03030
DNA replication
slb03420
Nucleotide excision repair
slb03430
Mismatch repair
slb03440
Homologous recombination
slb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWJ20_4011 (RFA1)
03420 Nucleotide excision repair
AWJ20_4011 (RFA1)
03430 Mismatch repair
AWJ20_4011 (RFA1)
03440 Homologous recombination
AWJ20_4011 (RFA1)
03460 Fanconi anemia pathway
AWJ20_4011 (RFA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slb03000
]
AWJ20_4011 (RFA1)
03032 DNA replication proteins [BR:
slb03032
]
AWJ20_4011 (RFA1)
03400 DNA repair and recombination proteins [BR:
slb03400
]
AWJ20_4011 (RFA1)
Transcription factors [BR:
slb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
AWJ20_4011 (RFA1)
DNA replication proteins [BR:
slb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
AWJ20_4011 (RFA1)
DNA repair and recombination proteins [BR:
slb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
AWJ20_4011 (RFA1)
MMR (mismatch excision repair)
AWJ20_4011 (RFA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
AWJ20_4011 (RFA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
Rep-A_N
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
30036097
NCBI-ProteinID:
XP_018733686
UniProt:
A0A167C4L4
LinkDB
All DBs
Position
C:complement(946717..948507)
Genome browser
AA seq
596 aa
AA seq
DB search
MTELTVCFAEFGRTSNPSEVVPKFPQLKLQVLKVKLIQGAEPSQNRMRLTVSDGVHYSQA
IVNLNEEKGGAQSDISVGSVIEVKSYDSHRLQTGKIVFVLYEWDVVGVESPIGHPTSLEA
NTEAKANDSMSPAPAPVAPVVAPPAPAPVTKPKAKPAAAPGNFTAIIPIDILSPYHNKWT
IRARVSNKSDIRTFTNARGEGKLFNVTLVDESGEIRATGFSQQVDAFYDLLQEGKVYYIS
KCRVQVAKKQFSNVQNDFELVFDRDSQIELCTDEVDVPKIKFDFTSIKDLGTADINGTVD
FIGVLKSINPAEQITSKNTGRPYDKRDVVLVDEGDYSIRATFWGKSAVDFSTPLESVIAI
KGAKISDFNGRNISILNSSTVSVDPDVPEAHALKGWYSTNGRDKTFEQLPGPSGATSTGN
SDDKNRTTIEKVISDQLGMTDQTDYFTIKGTISYIRNENMWYPSCTNADCNKKVIQDTTD
EWRCEKCNITIAEPNYRYIISMIVSDSTGQIWVSSFDDIGNIVIGMSAKELYQLQEQDLN
GFTEVITKALYKEYVLRCRARKDNYNDQVSVRYSAVRCTPVDYAHETQLLLQQLGI
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgacagagttaacggtctgttttgccgagtttgggcgcactagcaaccccagcgaagtg
gtgcccaagttccctcagctgaagttgcaagtactaaaagtcaaactgattcaaggcgct
gaaccaagccaaaacagaatgcgtcttacagtctcagatggagttcactattcacaagcg
attgtcaacctaaatgaagagaagggtggtgcacagtcggatatttctgttggtagtgtc
attgaggttaaaagctacgattctcacagattgcaaactggtaagatcgtgtttgttctg
tatgagtgggatgttgttggtgtggagagtcccattggacaccctactagtcttgaagcc
aatactgaggcaaaggctaatgattccatgtctccagctcctgctccggtagctcctgtt
gtagcgccaccggcccctgcaccagttactaagcccaaggcgaaaccagctgctgcccct
ggaaatttcacagctattattcctattgatattctttcaccctatcataacaagtggact
attcgtgctcgagttagtaataaatcagatattcgtacgtttaccaacgcacgaggtgaa
ggtaaactattcaatgtgacattagtggacgaatcaggtgagatccgtgctacaggattc
tctcaacaagttgacgcgttctacgatctgctgcaagaaggcaaggtttactatatttcg
aagtgccgtgtccaggttgctaaaaaacagttttctaatgttcaaaacgatttcgagctt
gtctttgatagagactctcaaattgaactgtgtactgatgaagttgatgttcctaagata
aagttcgattttaccagtatcaaagatcttggtactgctgatatcaatggtaccgttgat
ttcatcggtgtgttgaaatcaatcaatcctgccgagcaaattacctctaaaaacactggc
agaccatatgacaagagagacgtggttttggttgacgaaggagattattccattcgggca
actttctggggaaaatctgccgtcgatttttctacccctctcgagagcgtcattgcaatc
aagggtgccaaaatatccgattttaatggcagaaatatttccattctcaactcgtcaact
gtttcagtggatcctgatgtgcctgaagcgcacgcattgaaaggttggtatagcacaaat
ggccgtgacaagacttttgaacagctacccggtccgtcaggagccacctctactggtaac
agcgacgataaaaatagaactacgattgagaaagtaatttctgatcagctaggaatgact
gatcagaccgactatttcaccattaagggaaccatatcatacattcgtaatgaaaatatg
tggtatccttcatgtactaatgctgactgtaacaaaaaggtcatccaagacaccaccgac
gaatggagatgtgaaaaatgcaacataactattgccgaacccaactaccgctacatcatt
agtatgattgttagtgacagtactggccaaatttgggtatcaagttttgacgatattggt
aacatcgtcataggaatgtcagcaaaggagctctatcaacttcaagaacaagatctcaat
ggtttcactgaagtaattacaaaagctctctataaagaatacgtgctacgctgccgcgcc
cgcaaagataattataatgaccaggtctcggtcagatactctgctgtccgttgtacccct
gttgattacgctcatgaaactcagcttctccttcaacagcttggtatttag
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