Sugiyamaella lignohabitans: AWJ20_420
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Entry
AWJ20_420 CDS
T05270
Symbol
CLP1
Name
(RefSeq) Clp1p
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AWJ20_420 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_420 (CLP1)
Enzymes [BR:
slb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
AWJ20_420 (CLP1)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
AWJ20_420 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
SRPRB
ATP_bind_1
AAA_16
DUF116
nSTAND3
Motif
Other DBs
NCBI-GeneID:
30036306
NCBI-ProteinID:
XP_018734659
UniProt:
A0A167CWD1
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All DBs
Position
A:complement(1358664..1359671)
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AA seq
335 aa
AA seq
DB search
MSVYANLHFALEGLRPAATLGTGASNNSNPTSRGPCVLVLGPKDSGKTSLCKILTSYACK
QQRFPMLVNLNPSEGVFTVPGTLSAAPVSDILDVEQGWGESQINGPAHLHPKQPYAHFYG
LESPLTNVNYYKHVISRLALAVSSRLDKDEVVAGSGVIIDTPSTLMERDPGHSIVSSIVA
DFNVTAIVVVGHERVYSEMVKRFKDKKTVSVIKVVKSGGCVERDASYLRSLQSRSIHDYF
YGSFKQNLSPYTVTVDFSAVKVYRIAEESALQNTSVLPIGEDEVSAVTKDPASEYLVPLE
PSTILQNCVMAVLNASREDSIPSLVESEVLGFVHV
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgtatgccaatctacattttgcattagagggtctacgaccagcggcaacgctg
ggtactggagctagcaacaattccaacccaacttcgagaggtccttgtgtgcttgtgtta
ggtccgaaagactctggaaagacttcattatgtaagattctcacgagttatgcatgcaaa
caacagagatttcctatgctggtcaatttaaatcccagtgagggtgtatttactgttcca
ggaacactttcagcagccccagtttcagatatcctggatgtcgagcaaggatggggcgaa
agtcagatcaatgggccagcccatctccatcctaaacaaccatatgctcatttctacggt
ctcgaatctcctcttaccaatgtaaattactataaacatgtcatttccagactggcccta
gcagtatcttcaagactcgataaggatgaggttgttgctgggtctggtgtgattatcgat
acaccaagtacattaatggaaagggatccaggccattctatagtgtctagcattgtggct
gattttaacgtcactgcaattgtagttgtgggccatgaaagagtatattcagagatggtg
aaacgattcaaggataaaaagactgttagtgtcattaaagtagttaaatcaggtgggtgt
gtagagcgggatgcttcgtatctccggtctcttcagagcagatcgattcatgattatttt
tatggctcgtttaaacagaacctgtccccatacacagttactgtcgactttagtgcggtg
aaagtctatcgtatcgctgaagagtcggcactccaaaatacgtcagtgctgcctattggc
gaggatgaggtgtctgctgtgacgaaagaccctgcttcagagtatcttgttcctcttgaa
ccatcgacaattttgcaaaactgtgttatggctgtgcttaatgcctctcgagaggactcg
attccttcactagttgagtccgaggttcttgggtttgttcatgtgtaa
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