Sugiyamaella lignohabitans: AWJ20_4380
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Entry
AWJ20_4380 CDS
T05270
Symbol
PCF11
Name
(RefSeq) Pcf11p
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AWJ20_4380 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slb03021
]
AWJ20_4380 (PCF11)
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_4380 (PCF11)
Transcription machinery [BR:
slb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AWJ20_4380 (PCF11)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
AWJ20_4380 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
zf_PCFS4
Pfc11_Clp1_ID
DUF7340
zf-C2H2_4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
30036506
NCBI-ProteinID:
XP_018734037
UniProt:
A0A167CDR9
LinkDB
All DBs
Position
C:complement(2141698..2143314)
Genome browser
AA seq
538 aa
AA seq
DB search
MSKIEKFLAHAKATMEEQLRRRYQQEQQQLQMQQMHQAQQQQQQQYNNLQAFSDNQNPLS
QPALLVEIDRLIDLTGQRKAYDSNDVDAEKQLAILSQLRKVISTQPLPTTMLPSIQKQLV
VFSQKEMERLGQRMGPGGPGGPNGPGGPGGPGGPMGGPGYDQYPPYNNGPNGGPYGYNDR
NYGPGGPGFGPGHGPGPNHGSRRGDHRNSPGPNFLTGSNAAPIANARPGGLPVGLPTGPR
AQQQPIPTGPGGGASGTKGPGAAALPASLISSLTSAGLLNLNGSSRASSTEPGSRSGTPL
TEVVDLNSISLQKPRPSLIEKLYSDIPNQCSNCGKRFRNDQQHLKSAHLDWHFRVNKRLL
DENRSQSRCWYLTAEQWIEYKDEEEILGIAPDDDDGDKKGGSGKSKSELKELDLEELRNR
KVIAPSDKRLAALPCPICQEKFNSVWDDDEEEWVWKNAMRVQNRIFHATCYAEAERSGGD
LLQRILGTTPASSRPTPPPAAAPAPIDLASIIASVKRKAEENDNDLGPDDHRIKREKV
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagattgaaaagtttctggcacatgccaaagcgacgatggaagaacaattacga
cgtagataccaacaagaacaacaacagttgcaaatgcaacaaatgcatcaagcccaacaa
cagcaacaacagcaatacaacaatctccaggcatttagtgacaaccagaatccattgagc
caaccggccttgttagtagaaatcgatcggttaattgatttgactggccagcgtaaggct
tacgattccaatgatgtcgatgccgagaaacagcttgctattttatctcaacttcgaaaa
gtcatttcgacacaacctttacccaccactatgttaccgtccattcagaaacagctggtt
gtattttcacaaaaggaaatggagagactcggtcaaagaatgggaccaggtggtcctggt
ggaccaaacggaccgggaggaccaggaggaccaggtggccctatgggcggtccaggatac
gatcaatatcctccatataacaacggacccaatggaggtccatatggttacaatgacagg
aattacgggcccggtggacccggatttggcccaggtcacggacctggcccgaaccacgga
tcgagacgcggagaccatcgtaactctccaggtcctaatttcctgactggatccaatgct
gctcctattgccaatgctcgtcccggtggtcttcctgttggtttaccaacgggaccacga
gcacagcaacaaccaattcccaccggtcctggtggtggagctagtggaaccaaaggtccg
ggagctgctgcattaccagcatcattaattagttcactcacatcagcaggattactgaat
ctgaacggatccagtagagcgtcatctaccgagccaggatctagatcaggcactcctctt
acagaagtcgtcgacttgaatagcatatcgctgcagaaaccacgaccgtctctgattgag
aaactatatagtgacattcccaaccagtgtagtaattgcggtaagagattccgcaacgac
caacagcatttaaaatcagcccatttggactggcatttccgagtcaacaaacggctttta
gacgagaacaggtcacaaagccgatgctggtacttgactgccgagcagtggatagaatac
aaggacgaggaggagatcttgggtatcgcacctgacgatgatgatggagacaagaaagga
ggttctggcaagtcgaaatccgaattgaaggaattggatctcgaggagctaaggaaccgc
aaagtgattgctccgtcagacaaacggctggctgcactcccctgtcctatctgtcaagag
aagttcaactcggtatgggacgacgacgaagaagaatgggtgtggaaaaacgccatgaga
gtgcaaaaccgcattttccacgccacgtgctatgcggaagccgaacgttcaggtggtgac
ctgctccaacgaatccttggaaccacaccagcatccagcagaccgactccaccaccggca
gcagcccctgcacccatcgacctggccagcatcatcgccagcgtcaaacgcaaagcagaa
gaaaacgacaacgaccttggccccgacgaccaccgcatcaaacgagaaaaggtctaa
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