Sugiyamaella lignohabitans: AWJ20_4788
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Entry
AWJ20_4788 CDS
T05270
Symbol
TFB1
Name
(RefSeq) TFIIH/NER complex subunit TFB1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03022
Basal transcription factors
slb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AWJ20_4788 (TFB1)
09124 Replication and repair
03420 Nucleotide excision repair
AWJ20_4788 (TFB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slb03021
]
AWJ20_4788 (TFB1)
03400 DNA repair and recombination proteins [BR:
slb03400
]
AWJ20_4788 (TFB1)
Transcription machinery [BR:
slb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AWJ20_4788 (TFB1)
DNA repair and recombination proteins [BR:
slb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AWJ20_4788 (TFB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
30036957
NCBI-ProteinID:
XP_018736318
UniProt:
A0A167EAL2
LinkDB
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Position
D:complement(551288..553303)
Genome browser
AA seq
671 aa
AA seq
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MSAGTTVSTTYPANFKKEPGTIEISDGDRDGNRLFVWKPNNTGSAKPPINIKLETVTQLQ
ATPATSEKLHLKIICTVGDVSSATTPASGQTSQAPATPAAPGSETQSYVFAFKERSVMEN
TKTTIQKLVQAIRAAVTEKSANGTGQNGTSNGGANGTANNNNNNMNRPENKQAVVELDSK
KLLLNLNLQQGLLRENKELMRTFQETVINGGLANDKFWNTRIHLLRAYALTSSQKRGAYN
VLGTIRPTTGSDNQINVSLTREKIHDIFDQYPIVRQAYSDSVPGKMTEGSFWERFFLSRL
FRRLRGEKVPQTHLVDAILDTKYLTLYEEEQEGYNNRILGIVSTTSTSSGSSITNNNSNN
NINANNKRTREDDPISADNNDDNRPAGEVTDDMYHKIVPQYLDIGGNEENDPQKLGNLPD
ITMQPGKSDASSISLIRSMNSLSQRMLYGNATSRIISGRQEPASTEVSSLGDQLKFDDLE
SDSVADSNIELHLVNEPGISINGKSNSHEADDTTVIEQIRDRYSKSLQTGSSINLNDVGN
NTEDLKAAVGQVTSIIELRSQESDQASNIWTSNEQDKRLLDQVQLCHATSVEFLRHFWLH
FLSGDPNQASSISKLVTNLAKSLERIDAVSKAAPTPDAQNHARASLGPLKTSILTALDRY
EKALEASSAEK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaggaacgactgtttcgacgacgtacccagctaattttaaaaaggagccaggc
acaatagagatcagtgatggagaccgagatggaaaccgtctgtttgtgtggaaaccaaat
aatacggggagtgctaaaccaccaatcaacatcaaattagaaaccgtaactcaattacaa
gccactccagcaacgagtgagaaattgcatttaaaaatcatttgtacagtaggagatgtt
tcatctgctacaactccagcatcagggcagacttcacaggcaccagcgacgccagctgcc
ccaggaagtgagactcagagctatgtttttgcattcaaagaacgatcggtaatggaaaat
accaaaacgaccattcaaaagttggttcaagctattcgagcagccgtcaccgagaaatct
gctaatggtactggtcaaaatggcacttctaatggtggcgccaacggtacagctaataat
aataataataacatgaatcgtcctgagaataaacaagcagtagtggaattggactcgaaa
aagctgctactcaacttaaatcttcaacaaggattattacgagaaaataaagagctaatg
agaacgtttcaagaaacagtgattaatggaggacttgcaaatgacaagttctggaatacc
cgaattcatttactacgagcatatgcattgacgtcgtcacaaaaaagaggtgcttataat
gttttaggaaccattcgaccaactactggcagtgataatcagatcaatgtttcattaaca
agagagaaaatccacgacatttttgaccaatatcccatagttcgacaagcatatagcgac
agcgtaccaggtaaaatgaccgagggttcattctgggaacggttttttctgtctcgactg
tttcgccgtttacgaggcgaaaaagttcctcaaactcatcttgtagacgccattctcgat
acaaaatacctgactctctacgaagaagagcaagagggatacaataatagaattctcggt
atagtaagtactaccagtacgagtagcggtagcagtatcaccaacaacaacagcaacaat
aacattaatgccaataacaagagaactcgagaagacgaccctatcagcgccgataataac
gacgacaaccgacctgctggggaagtcactgatgacatgtaccataaaatagttccccag
tatctcgatattggcggcaacgaagaaaacgacccacaaaagctgggaaatctgcctgat
attaccatgcaaccaggcaaatccgacgccagttccatctcactaatccgatccatgaac
agcctatcccaacgcatgctctatggcaatgccacttcacgtataataagtggtcgacaa
gagccagccagcactgaagtatcgtcacttggcgaccaattgaaattcgatgatctggaa
agcgattcagttgcagactcgaatatcgaactccatctcgttaatgaacctggcatcagc
atcaacggaaaatccaattcacatgaagcagatgacaccaccgttattgaacagatccga
gatcgatactcaaagagtcttcaaaccggcagctctattaatctgaacgacgtcggcaac
aacaccgaggatttgaaagctgcagtcggtcaagtgacatcgattatagaactacggtcg
caagagtcagatcaagcgtcgaatatctggacgagcaacgagcaagacaaacgacttctc
gatcaagttcagctctgccatgccacctctgtcgagttccttcgccacttctggctgcac
ttcctctccggcgaccccaaccaggcctcttccatatccaaacttgtcaccaatctcgcc
aaaagtcttgaacgaatcgacgctgtttccaaggcagcaccaacccccgacgctcaaaac
cacgctcgagcctcgctcggtcccctaaaaacgtccatactgaccgccctagaccgctac
gaaaaggctctcgaagcgtcttccgccgagaaatag
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