Sugiyamaella lignohabitans: AWJ20_4807
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Entry
AWJ20_4807 CDS
T05270
Symbol
TFB4
Name
(RefSeq) TFIIH/NER complex subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03022
Basal transcription factors
slb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AWJ20_4807 (TFB4)
09124 Replication and repair
03420 Nucleotide excision repair
AWJ20_4807 (TFB4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slb03021
]
AWJ20_4807 (TFB4)
03400 DNA repair and recombination proteins [BR:
slb03400
]
AWJ20_4807 (TFB4)
Transcription machinery [BR:
slb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AWJ20_4807 (TFB4)
DNA repair and recombination proteins [BR:
slb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AWJ20_4807 (TFB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
DUF4334
Motif
Other DBs
NCBI-GeneID:
30036979
NCBI-ProteinID:
XP_018736333
UniProt:
A0A167EB47
LinkDB
All DBs
Position
D:complement(608637..609689)
Genome browser
AA seq
350 aa
AA seq
DB search
MNAVDDTHASLGGSERTGSDEHPTLLGIVLDTNPTAWAELENKLSLKEAVESLLIFINAH
LSLNNANRVAVIAAHTTGAKFLYPKPPSSSFENGSQSGHTSLKAMSGTTGTANIFDRQTM
YRQFREVDEAVVGELDRLVSSATEKSVRSTQSAVSGALSLALTYINRVNSNEDEVKTHAR
ILLVSVSGDLSSQYIPTMNCIFAAQKKRIPIDVCKLAGDTVFLQQASDSTNGTYMKLDHP
RGLVQYLLSAFLVDPAILPHVNLSTQRDVDFRAACFVTKTVVDIGCVCSVCLCIMSKVPA
DGSCPMCGTVYDPQALQKINRKPMVIVKKKPKKKKAKLDSTPVGTPSPIP
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctgttgatgatacacatgcttccctcggaggttctgaacgaaccgggtcagat
gagcatcccacacttttgggaatagttttagacacaaatcctactgcatgggctgaatta
gaaaataagctctcattgaaagaggcggttgaatcgttgcttatatttatcaatgcgcat
ttatctttgaataatgctaatcgagtggcagtgattgctgcacacaccactggggccaag
ttcttatatcctaaaccaccgagttcgtcatttgaaaatgggtcacaatcgggccataca
agcttaaaagcaatgtcgggtaccaccggcacagcgaatatttttgataggcaaaccatg
tatcgacagtttcgtgaggttgatgaagcagttgtaggtgaattggatcggctagtatca
tctgctacagagaagagcgttcgatccacacaaagtgcggtctcaggcgcattaagtcta
gctctcacatatatcaatcgagtgaattccaatgaagacgaagttaagacccatgcacgc
attttactggtcagtgtatctggagatttgtcttcacaatatatccccacaatgaattgt
atttttgcagctcagaaaaagcgtattcctattgatgtgtgcaaacttgctggtgatact
gttttcttgcaacaagcctccgattctacaaatggaacttacatgaaacttgatcatccc
aggggactagttcaatatttgttaagtgcatttctagtggatcctgccatcctaccgcac
gttaacctcagtactcagcgtgatgttgatttccgtgctgcttgctttgtcacgaaaaca
gttgtcgatattgggtgtgtttgtagcgtttgcttatgcattatgagcaaagttcctgcc
gacggttcctgtccaatgtgtggcacagtatatgatcctcaagctcttcaaaagattaac
agaaagcctatggtaattgtaaagaagaaaccaaagaagaagaaagcgaaactggactct
actcccgtcggtactccttcccctatcccatga
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