Sugiyamaella lignohabitans: AWJ20_5114
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Entry
AWJ20_5114 CDS
T05270
Symbol
RAT1
Name
(RefSeq) ssRNA exonuclease RAT1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03008
Ribosome biogenesis in eukaryotes
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AWJ20_5114 (RAT1)
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_5114 (RAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slb03021
]
AWJ20_5114 (RAT1)
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_5114 (RAT1)
03009 Ribosome biogenesis [BR:
slb03009
]
AWJ20_5114 (RAT1)
03016 Transfer RNA biogenesis [BR:
slb03016
]
AWJ20_5114 (RAT1)
Transcription machinery [BR:
slb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AWJ20_5114 (RAT1)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
AWJ20_5114 (RAT1)
Ribosome biogenesis [BR:
slb03009
]
Eukaryotic type
Pre-60S particles
RNases
AWJ20_5114 (RAT1)
Transfer RNA biogenesis [BR:
slb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
AWJ20_5114 (RAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF7794
DUF5520
Motif
Other DBs
NCBI-GeneID:
30037321
NCBI-ProteinID:
XP_018736632
UniProt:
A0A167EJM5
LinkDB
All DBs
Position
D:1570764..1573742
Genome browser
AA seq
992 aa
AA seq
DB search
MNGIVHPCTHPEGRPPPETEDEMMLEVFKYTDRVVSMARPRKILMIAVDGVAPRAKMNQQ
RSRRFRSAQDARILAEEKQRAIAEAEARGEIIDEAIKGKKAWDTNVITPGTPFMDILAKS
LRYWVAYKLNNDPGWKDVKVIISDASVPGEGEHKIMEFIRSQRSDPAHDPNTSHCIYGLD
ADLIFLGLATHEPHFKILREDVFAQDSNKRRKNNNAFALTEEEKRREEDEEAVEKAKPKP
FIWLHVDILRQYLEIELDVPRLPFVFDIERAIDDWVFMCFFVGNDFLPHMPSLDVRDNGI
DILIGIWRRSLPAMKGYMTCDGQVDLSRVQIMMRALGQQEDGIFRKKREGEVRRLRNEKK
RRIENDQRRAYMNQMSAPPPVALSKNRGERAPIAPLDSMPLYSTSGESVGKTHMSNSDIV
ANRNALNLANMANKTAAQELKAKLLLDGIDSGELEKSKAEHIGDEEDAGNKGEVDKEEGD
EEDVETQTPNEEDVVVAGQKRKATSQLQKPTTSGSGQGEDEFDEPEDNIKLWEPGYRNRY
YSNKFHVSENDTEFRKGVVKKYIEGICWTLLYYYQGCPSWNWYFPYHYAPFAQDLVDLAE
IEIKFELGEPFAPFEQLMSVLPADSSHTLPDIFHPLMSDPKSSIIDFYPVDFPIDMNGKK
MAWQGVALLPFIDEKRLLTEVQALYPHLTDHERYRNGRRQEVLLISSANKLYKDVKDRLY
GESKTSCVEFRSDKGNGLAGLVRRAPGIQPDRPLAFPLNTGDMPSFDPDMSLVMEYSMPE
LAHYNKSMLLTGVKLIDPVLTYEDKETIRNGPKKNMFHGRNNRNVEYNTVKPHPVSTGIQ
RSGGYKYFVSNGTSDQRDQHGYGSGSRNGYGQGGYNSSSYNGGGYGAHGGYGRGGYNQGV
YGHDRYSQGGYGQGGYGNNGYNNGGYGQSGYGQTGNSQSGYGSGYGYGYGYDRAASQGGS
GGYGYGRDNNRNGYNDNRYGYNQGRSQPHGRY
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtatagtacatccctgtacgcatccggagggcagaccccctcctgaaactgaa
gatgaaatgatgcttgaggtcttcaaatatacagaccgtgtggtctctatggccagacca
agaaagattcttatgattgctgtagatggagtcgcacctagagcaaagatgaaccagcaa
agatcgcgtcggtttaggtctgctcaagatgctcgtattctcgctgaggaaaagcaacgt
gctattgccgaggctgaagccagaggtgaaattatagacgaggccattaagggtaaaaaa
gcttgggacaccaatgttattacaccgggtactccatttatggatatactggcgaaatct
ttgaggtactgggttgcttacaaactcaataatgaccctggttggaaggatgtaaaagtg
attatttccgatgcatcagtccctggcgaaggtgagcacaagatcatggaatttattaga
agtcagagaagcgatcccgcacacgatcctaacacgagccactgtatttatggtctggat
gctgatttaatctttttaggactcgctactcacgagcctcattttaagattttgcgtgaa
gatgtatttgcacaagacagcaataaacgtagaaagaataataatgcattcgcattgacg
gaagaagaaaaaaggagagaggaagacgaagaagcggtggaaaaagcaaagccaaaacct
tttatctggttacatgtcgatatattgcgccagtacctggaaatcgaactagatgtgcct
agactaccttttgtctttgatattgaacgagcaattgacgattgggtatttatgtgtttt
tttgttggtaacgatttcctgcctcacatgccttctttagatgtacgcgataacggtatt
gatattttgattggcatttggagacggtctctgccagctatgaagggatatatgacatgc
gacggacaagttgatctttctcgtgttcagataatgatgagagctcttggtcaacaagaa
gatggcattttcagaaagaagcgggaaggcgaggttagaagattgcgtaacgaaaagaag
cgtagaattgaaaatgatcagagaagggcatatatgaatcagatgtcagcaccaccacct
gtggcattaagtaaaaataggggagagcgagcaccaattgcgccgctagatagcatgcct
ctatatagtacatctggtgagagcgttggcaaaacacatatgtcaaacagtgatatagta
gccaatcgaaatgcgctgaatttggctaatatggccaacaaaacggctgcacaagaactc
aaagcgaaacttttattagacggaatagattctggagaacttgagaagtcaaaagcagaa
catataggagatgaggaagacgctggcaataaaggagaggttgataaagaagaaggagac
gaggaagatgttgaaactcaaactcctaatgaagaagatgttgtggttgctggtcaaaaa
cgtaaagctacctcacaattgcagaagccgaccacatccggttctggacaaggtgaagac
gaatttgatgagcctgaagacaatatcaagctgtgggagccgggttacagaaaccgatac
tattccaacaagttccatgtgtccgaaaatgatacagagttccgtaagggtgttgtcaaa
aagtatattgagggaatttgttggacactactatattattatcagggatgtccttcgtgg
aactggtattttccttaccactatgctccttttgcccaagatttagtagatctagcagag
attgaaataaaattcgagctaggggaaccttttgcaccatttgaacaattaatgagtgtg
ctaccggcagatagctcacacactcttccagacatttttcatcctttaatgagcgatcct
aaatcgagcattatagacttttatccggtggatttcccaattgacatgaatggcaaaaag
atggcttggcaaggagtggccctgttaccgtttattgacgagaaaagactcttgacagaa
gtacaggcactatacccccacttaactgaccatgaaagatataggaatggaagacgccag
gaggtactattgatttccagcgcgaataagctatacaaagatgtcaaagataggttatat
ggagaatcgaaaacatcatgtgttgaattcagatcagacaagggaaatggattagctggc
ctcgttcgccgagctccgggtatccaaccagatcggccacttgctttccctctaaacact
ggtgatatgcctagttttgatcccgatatgtctctagttatggagtactcgatgcctgag
ttggctcattacaataaaagtatgcttttgacgggagtcaagctcattgatccagttctt
acctacgaagataaggaaactataagaaacggtccaaagaaaaatatgtttcatggaaga
aataacagaaacgtggaatacaatacagtaaaaccacatccagtttccactggtattcaa
agaagtggcggttataagtatttcgtttccaatggcacatcagatcagcgagaccaacat
ggctatgggtcaggttctagaaatggatacggtcaaggtggatataatagcagtagctat
aatggaggaggttatggggcgcatggtggatatggtcgagggggatataaccaaggtgtc
tatggccacgatagatatagccagggaggatatggacaaggtggatacggaaataacggt
tataataatggcggatatggccaatcaggttacggccaaactggaaattcgcaaagcggg
tatggatcaggatacggatacggatacggatatgacagagctgccagtcaagggggcagt
ggtggctacggttatggtagagataataatcgaaatggttacaacgacaatagatatggc
tacaatcagggccgtagccaacctcatggcagatattaa
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