Sugiyamaella lignohabitans: AWJ20_5219
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Entry
AWJ20_5219 CDS
T05270
Symbol
PRP40
Name
(RefSeq) Prp40p
KO
K12821
pre-mRNA-processing factor 40
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AWJ20_5219 (PRP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slb03041
]
AWJ20_5219 (PRP40)
Spliceosome [BR:
slb03041
]
Complex A
U1 snRNP components
U1 related factors
AWJ20_5219 (PRP40)
Complex B
AWJ20_5219 (PRP40)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
30037437
NCBI-ProteinID:
XP_018736734
UniProt:
A0A161HLJ9
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Position
D:1915556..1918030
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AA seq
824 aa
AA seq
DB search
MAWEPHQDDQGRVYYYNSVTRQSTWEKPDELLTPLEIALKRTGWTEYETDDGAKYWNNDA
SGESVWELPEDIKKLEDEIKNKRSEDRTELANLPVGPSAANRIPAGIVSGGAPGAGISVS
GTSVSGASGVSQIPLSSNNKFPSQSAVHPDRVEYLRKNLEGQDPMQAAVEEYRNALRRAG
VDKIWSNPEAGDNQEETHEKENQNGSRNDDRDRQNEDDRNGSGYREDREGRERRDGRERT
NGSGERTRKSHMKSLKEQVFARPTFMPWNEAVKVLITDPGYWVIRDPADRRKHFDEFISE
VTNKYQTERLEQWTSVIKSMSDVLANGKYSRRIKYYSTWATFKDDLNREAPFQQALEYFP
GDFGSRLQRFVFHKRLQELRKQRNADVEASKTQELRVLRDQFSKLRVDYSSRWEDVFSSL
QKSGVLSAKIHHLDNLDILEGYEEYMKTIEREENEKLRDLKKLRYRQERKNRQNFILLLQ
ELKQKGQLNVHSKWAKENDDDTKAIFPLIKDDPRYINLCGQPGSTPLELFWDTIEEEKRK
INLNRELVIDIISATRSNMPTSLEEFEQLLKSDPRGGQIPAELLQDVYKSLKEKGIDYSS
SSLSRRDHDTDRIRGRERSRDRDRDRDHGRNRDRDRDRDRGGEYDSYAKSSSRRDRSRSR
EHRSHSHRDRDAHDRDHERSYSRRDRSRSRSRSSYSRSRRESRSHSQSHHSDDDRFRAAR
SHKRHTMDFYDALDALRPRIVLEDTWKTIQPRVESLPEYKPLDESECRSIFDSYLRRLER
ANAPRPPPPRRDRHQRDLERVSHNEDLRNRPSGRGLDSGPILDY
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcctgggaaccgcatcaagatgaccagggcagagtctactattacaattcagtgacg
cggcagagtacttgggagaagccagatgagctacttactccgctcgagatagcccttaag
agaacgggatggaccgagtatgagactgatgatggcgccaaatactggaataatgacgct
tctggtgagagtgtgtgggaactgccagaggatatcaagaaactggaagacgagatcaaa
aacaaacgcagtgaagatcgcacagagttggcaaatctgccggtaggaccaagtgctgct
aatagaatcccagctggaattgttagtggtggtgctccaggtgctggaatttctgtcagt
ggtacaagtgtatcaggtgcgtcaggtgtctcgcagattccattgtcttcaaataataaa
tttccgagccagagtgctgttcatccagacagagtcgaatatctgcgcaagaatctcgag
ggtcaagatcccatgcaagcagctgtagaggagtatcgaaacgcattgagaagagcaggt
gttgacaagatttggtcaaatcctgaagctggtgacaaccaggaagaaactcacgaaaag
gaaaaccagaatggttcacgaaacgacgaccgcgaccgacaaaacgaagatgatagaaat
ggaagtggttatagggaagacagagaaggaagagagagacgcgatggacgagaaagaaca
aatggctcgggagagagaacaagaaagagccatatgaaaagtttgaaggagcaggtgttt
gctcgtcctacttttatgccctggaacgaggccgtgaaagtcctcatcacggatcctgga
tactgggtgattcgtgatccagcagaccgtagaaagcattttgacgagttcatcagcgaa
gtcactaataaataccagactgaacgtctggaacagtggacctcggtgataaaaagcatg
tctgacgtactagcaaatggtaagtacagtcgtagaatcaagtactattcgacatgggcc
acttttaaagatgatctgaatcgagaagcgccattccaacaagctctcgagtactttcca
ggagatttcgggtcgagactccagcgatttgtatttcataaacgattgcaagaacttcgc
aagcagcgaaatgcggacgtagaagctagtaaaacccaagaattacgagtactccgagat
cagttctcaaaactacgtgtcgactacagctcacgttgggaagatgtgtttagttctcta
caaaaaagtggtgttttatccgcaaaaatacaccatcttgataatctcgatattctcgag
ggttatgaggagtatatgaagactattgaaagagaagaaaatgaaaagctacgagacttg
aagaaacttcggtatagacaagaacgaaagaatcgtcaaaacttcattctattgttacaa
gaattaaaacaaaaaggccagctcaatgtgcattccaagtgggcaaaagagaatgatgac
gatacaaaagccattttcccacttatcaaggacgacccccggtatattaatttgtgtggt
cagcctggatccacacctctagagctgttctgggatacaattgaagaagaaaaacgtaaa
atcaacctcaaccgagaactcgttattgatattatatcagccactcgaagcaatatgccc
acttcactcgaagaattcgaacaacttctgaaatccgatcctcgtggtggccagatccct
gctgaactgctgcaggacgtttataagagcttgaaagaaaagggtatcgactattcttct
tcatccctctctcgacgagatcacgatactgatcggattcgtggtcgggaacggtcacga
gaccgcgatcgtgatcgtgaccacggcagaaacagagatcgtgatcgtgaccgtgaccgt
ggaggagaatatgattcttatgcgaaatcgtcgtctcgcagagataggtcacgatctcga
gaacaccgttcacattcgcatcgagaccgcgatgcgcatgaccgggaccacgagcggtca
tattcacgtcgtgaccggtctcggtctcggtcccgtagcagctactcacgatcacgtcgc
gagtctagatcacactcacaatcccaccactcggacgacgaccgattccgagctgctcga
agtcacaaacgacacaccatggatttctacgacgctctcgatgctctacgaccgagaatt
gtcctggaagatacctggaaaaccatccagccccgtgtcgaatcgctgcctgaatacaaa
ccactcgacgaatccgaatgccgcagcatcttcgactcgtacctccgtcgtctcgaacga
gccaacgcaccacgaccacctccacctcgccgagaccgtcaccaacgagacctcgaacgc
gtgtcccacaacgaagacctccgcaaccggccctcgggccgcggtctcgacagcggaccc
atcctcgactactaa
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