KEGG   Sugiyamaella lignohabitans: AWJ20_5263
Entry
AWJ20_5263        CDS       T05270                                 
Symbol
PTA1
Name
(RefSeq) RNA-processing protein PTA1
  KO
K06100  symplekin
Organism
slb  Sugiyamaella lignohabitans
Pathway
slb03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:slb00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    AWJ20_5263 (PTA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:slb03021]
    AWJ20_5263 (PTA1)
   03019 Messenger RNA biogenesis [BR:slb03019]
    AWJ20_5263 (PTA1)
Transcription machinery [BR:slb03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     AWJ20_5263 (PTA1)
Messenger RNA biogenesis [BR:slb03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     AWJ20_5263 (PTA1)
    U7-dependent histone pre-mRNA processing factors
     AWJ20_5263 (PTA1)
SSDB
Motif
Pfam: SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 30037486
NCBI-ProteinID: XP_018736775
UniProt: A0A167ENX5
LinkDB
Position
D:2020706..2022898
AA seq 730 aa
MSIEEQLESLNKARELVRDDPNNYIQIIPGIVSVAQRPETQFRQWCANFFLECFTCNDLD
NETKQQLALNCLDPLGLLIQETSEPGDWATVKTAISCCSCIYPLIFSYVCANSGEATVWA
KISDLKTKILDKWELDAESVASKKVRFGIQAACTKFAQQVISVQSYCSRDPRMNRSQDTN
SEDVSLALVPPGHPLIEPSTIEAQGLGLLDRMLSVFTESHVYAPTITCTLNALFPLLTSR
PSSVPKILRSILSFDTTAKTVVPQTPNSAYTDLEIKFIERSLKLMLTHCIRKELAPKFTA
QIHRYISNISEARASQNLKKRLGESADQTAGDKRPKLEETGAPAAAAAKPDMPVNSSTTV
PAGPLSFSSLFNLISSNDLLASFDAKELPKDIAINIALTSIALASQTLLDNSIDIIRKRY
QNLLETSQSSTVSKGGASLDASYDDDEDDLDAMVAAQSAQVEAGADYGEEDDEDKEASLL
PASSFSLALPSKLSTDQRKVELGRVVDRLISYSSMSTTILSSGAAKANKGLNRVAVTDWN
KDTWIIIASRLATRGACNSGSVEAKTVIRKHIFNYVVANFRERLEIIISWLTEEWFNEFG
SGLASDNDKPEADESNSVYYLWASQVFDHIMPLIEADDTKGFIRLLSDLPQLNRSLINKM
RSLCVDPLRAKIGFMAIRYLIKLKPPVKEFCLDLLEDLYKSDEDSRKVGGAILKTYRPKF
IEEQDAVKVE
NT seq 2193 nt   +upstreamnt  +downstreamnt
atgtccatcgaagaacaactcgagagtctgaacaaggcaagggaactggttcgagatgac
cccaataactacattcagattatcccgggtattgtctcggtagcccaacgaccagagacc
caatttcgtcaatggtgcgccaattttttcttggaatgttttacctgtaatgatttggat
aacgaaacaaaacagcagctggcattgaattgtttggaccctttgggtctgttgattcag
gaaacaagtgaacccggcgactgggccacggtcaaaactgcgataagttgctgttcgtgt
atttatccattaatattttcgtatgtttgtgccaattcaggagaagccactgtatgggcc
aagatatccgatctgaaaaccaagattcttgataaatgggaattagatgccgagtcggta
gcatcgaaaaaagttcgatttggtattcaggcggcttgtaccaagtttgctcaacaggta
atttccgtgcaatcgtattgctcgcgagatcccagaatgaataggtctcaagatacgaat
agtgaagacgtttctttggctcttgtgccgcctggtcaccctttaattgaaccttcaact
atagaggcacagggtctgggtctattagatcgcatgctgtctgtgtttaccgaatcacac
gtttacgcacccaccatcacctgtacattaaatgcattattcccactgttaacgagtcga
ccatcatcagtgcccaaaatcctacgtagtattctaagtttcgatacaaccgccaagact
gtcgttcctcaaacccccaattcagcatatacggatcttgaaatcaaattcatcgagcgg
tctttaaagctaatgcttactcattgtattcgtaaagaactggcacccaagttcactgcc
caaatccatcgttatatatccaatatttctgaggcccgagcctcacaaaacctgaagaaa
agactcggcgagtctgccgaccaaactgctggcgataaaagaccgaaacttgaagaaact
ggtgcacctgctgccgcagctgctaaacccgacatgccagtcaacagctcaacaacggtc
cctgccggtccattatcattttcctctttatttaatcttattagttctaatgacttacta
gcatcatttgacgcaaaggagttacccaaggacattgctatcaatattgctctcacaagt
attgcgcttgcgagtcaaacactactggataattctattgatatcattcggaaaagatat
caaaatcttttggagacgagccaaagctctaccgtatcgaagggaggagcatcattggat
gcttcatacgatgacgacgaagacgatttagatgccatggtagctgcccagtctgctcaa
gtagaggctggagctgattatggcgaggaggatgacgaagataaagaggcctctttatta
ccagcatcgtcgttttcgcttgccttgccatctaaactctcaacagatcagcgtaaggtt
gagttgggcagagttgtagataggctgatctcatatagtagcatgtcaaccacgatttta
tcgtctggagccgctaaagctaacaagggattaaacagagttgctgtgacggactggaat
aaagatacttggattatcattgcttcgcggcttgccactagaggcgcttgcaactctgga
tctgtggaagccaaaactgtaattagaaaacatatattcaattatgttgtggcaaacttt
agagagcgtttagaaattattatttcttggctaaccgaggagtggtttaatgagtttggt
agtgggcttgctagtgacaacgacaagccagaggcggatgaatcaaactctgtttactat
ttatgggcttcacaggtgtttgaccatataatgccgctaattgaagctgatgatacaaag
ggttttattcgacttttatcagatttaccacaactcaacagatcgctcataaataaaatg
cgcagtctttgtgtggatccacttagagcaaagattggtttcatggcaattcgatatttg
atcaagctgaaaccacctgtaaaagaattttgcctagatctgcttgaggatttgtataaa
agtgatgaggatagtcgaaaggtgggtggagccatacttaagacatacagaccgaagttc
atagaagagcaagacgctgtcaaagttgaataa

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