KEGG   Sugiyamaella lignohabitans: AWJ20_670
Entry
AWJ20_670         CDS       T05270                                 
Symbol
YTH1
Name
(RefSeq) Yth1p
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
slb  Sugiyamaella lignohabitans
Pathway
slb03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:slb00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    AWJ20_670 (YTH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:slb03021]
    AWJ20_670 (YTH1)
   03019 Messenger RNA biogenesis [BR:slb03019]
    AWJ20_670 (YTH1)
Transcription machinery [BR:slb03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     AWJ20_670 (YTH1)
Messenger RNA biogenesis [BR:slb03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     AWJ20_670 (YTH1)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2
Other DBs
NCBI-GeneID: 30037728
NCBI-ProteinID: XP_018734894
UniProt: A0A161HIN8
LinkDB
Position
A:complement(2124291..2124662)
AA seq 123 aa
MAELLERSSRLPPEAWLPSQRMIRSVTNRLFRNGYCTQSPDCLYLHIDPQSKIPPCPNYD
RGFCRLGPECPRRHVTRVFCPKYLTGFCPEGPTCSMGHPRFVGITDDMRIAKEYDPLPSW
KRQ
NT seq 372 nt   +upstreamnt  +downstreamnt
atggcagaactcctcgagcgaagctcgaggttgccgccggaggcatggctgccatcacag
agaatgatcagatcagttactaacaggcttttcagaaatggatactgtacacaatcaccc
gattgtctctatcttcatattgatccacagagcaagatcccgccatgtcctaattacgac
cgtggtttctgtagactgggtcccgagtgtcctcgaaggcacgttaccagggttttctgt
cctaaatacctgacaggattctgtcccgaaggtcctacttgtagtatgggccatccacga
tttgtgggtattacggacgacatgcggattgctaaagaatacgacccactgccgagctgg
aaacggcagtga

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