Sugiyamaella lignohabitans: AWJ20_692
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Entry
AWJ20_692 CDS
T05270
Symbol
CDC48
Name
(RefSeq) AAA family ATPase CDC48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
AWJ20_692 (CDC48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_692 (CDC48)
03009 Ribosome biogenesis [BR:
slb03009
]
AWJ20_692 (CDC48)
04131 Membrane trafficking [BR:
slb04131
]
AWJ20_692 (CDC48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slb04147
]
AWJ20_692 (CDC48)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
AWJ20_692 (CDC48)
Ribosome biogenesis [BR:
slb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
AWJ20_692 (CDC48)
Membrane trafficking [BR:
slb04131
]
SNARE
SNARE associated proteins
Others
AWJ20_692 (CDC48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
AWJ20_692 (CDC48)
Exosome [BR:
slb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
AWJ20_692 (CDC48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_2
AAA_5
AAA_16
AAA_33
TIP49
AAA_22
AAA_14
RNA_helicase
Mg_chelatase
nSTAND3
AAA_28
AAA_17
AAA_7
IstB_IS21
Parvo_NS1
ATPase
NPHP3_N
AAA_18
AAA_24
Sigma54_activat
ResIII
PhoH
ABC_tran
AAA_3
DUF815
AAA_25
Vps4_C
TsaE
SLFN-g3_helicase
KAP_NTPase
Motif
Other DBs
NCBI-GeneID:
30037752
NCBI-ProteinID:
XP_018734916
UniProt:
A0A167D3N9
LinkDB
All DBs
Position
A:2209079..2210863
Genome browser
AA seq
594 aa
AA seq
DB search
MAQIRELVELPLRHPQLFKSIGIKPPRGILMFGPPGTGKTLMARAVANETGAFFFLINGP
EIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLM
DGMKARANVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILRIHTKNMKLAD
DVDLEAIASETHGYVGSDLASLCSEAAMQQIREKMDLIDLEEETIDAEVLDSLGVTMENF
RFALGISNPSALRETVVQSVNVTWDDVGGLDKIKQELKETVEYPVLHPEMYTKFGLSPSK
GVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWFGESESNIRDIFDKARAAAPC
VVFLDELDSIAKSRGGSVGDSGGADRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAL
LRPGRLDQLIYVPLPDEEGRLSILSAQLRKTPLEPGLDLREIARSTNGFSGADLSYIVQR
SAKFAIKDSIEASIAASRNGGDESGAADAGAEDDVAMEDPVPFITREHFEEAMKTASRSV
SDSELRRYEAYAQQLRTSRGTATFRFSGAAADSSSGAPGGAAVGAEGEDDDLYS
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatccgtgagcttgttgaactgcctctgcgtcatcctcaactgtttaagagt
atcggtattaaacctcctagaggtattctgatgtttggtcctcctggtactggtaagact
ttgatggcccgtgccgtggctaatgagactggagcatttttctttttgattaatggtcca
gagattatgagtaaaatggccggtgagtcggagagtaatctgcgaaaggcatttgaagag
gccgagaaaaacgctcccgccattattttcattgatgagatcgattccattgctcctaag
agagacaagactaatggagaggtcgagcgaagagtcgtttcgcaattgctgactttgatg
gacggaatgaaggcccgtgctaatgtggtggtgattgctgctactaaccgacccaactcg
attgatcctgctcttcgtagatttggccgttttgatcgtgaggtcgatattggtattccc
gatccaactggccgtttggagattctgagaattcataccaagaacatgaaactggctgat
gatgtcgatttggaggctattgccagtgagactcacggttatgtgggttcggatttggcc
tcgttgtgttcagaagccgctatgcaacagattcgtgagaagatggatctgattgatttg
gaggaggagacgattgatgccgaggtgttggatagtctgggagttacaatggagaatttc
cgatttgcacttggtatttcgaacccatcggcccttcgtgagactgtggttcaaagtgtc
aatgtcacttgggacgatgttggaggtcttgataagatcaagcaggagctcaaggagact
gtcgagtatccagttttgcaccccgagatgtataccaagtttggtttgtctccatcaaag
ggagttctcttttacggacctcctggtactggtaagaccttgcttgccaaggccgtggcc
actgaggtgtctgccaatttcatttccgttaaaggacccgagttgttatccatgtggttt
ggagagtcggagtccaatattcgagatatctttgacaaggcccgtgctgctgctccatgt
gttgttttccttgatgagttggattccattgccaagtcgagaggtggatccgtgggcgat
tccggcggtgctgaccgtgttgtgaaccaattgctgaccgagatggacggtatgaatgcc
aagaagaacgtgtttgtgattggtgctaccaaccgacctgatcaaatcgaccctgctttg
ttgagacccggtcgtttggaccagttgatttacgttcctcttcctgatgaagagggtcgt
ttgtcgattctgtctgctcaactccgtaagactcctttggagcctggtcttgatttgcgg
gaaatcgcccgttctaccaacggattctcgggtgccgatttgtcgtatattgttcaaaga
tcggccaagtttgccattaaagacagtatcgaggccagtattgctgccagtcgtaacgga
ggcgacgagtccggtgctgctgatgccggtgctgaagacgatgtcgctatggaggacccc
gttccattcatcaccagagagcactttgaggaggccatgaagaccgcctcgcgttctgtc
agcgactcggaactccgccgttacgaagcctatgctcaacaactccgtacctccagagga
actgccactttccgatttagcggtgccgctgccgactcttcaagcggtgctcccggtggt
gctgctgtcggtgccgaaggtgaggatgacgacctctacagctaa
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integrated database retrieval system
