Sugiyamaella lignohabitans: AWJ20_705
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Entry
AWJ20_705 CDS
T05270
Symbol
SKI6
Name
(RefSeq) Ski6p
KO
K11600
exosome complex component RRP41
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_705 (SKI6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_705 (SKI6)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AWJ20_705 (SKI6)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
AWJ20_705 (SKI6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
30037767
NCBI-ProteinID:
XP_018734927
UniProt:
A0A167D414
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Position
A:complement(2244740..2245285)
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AA seq
181 aa
AA seq
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MNLDSTFLSVNISVSPFSTVDRKKRPRNDRRIQECAMSIQRTFQEAIMGHLHSRTEIVIS
LHVLAQDGGFFAACINATSLALIDAGVPMYDYVSACSTALYDSISPLLDPNNAEESDLPF
LTVATIGKTEKVSMLLLESKVPLDRLESLIAVTISGCHSLRDQMDRQVRKHGHLRITKRS
E
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgaatttggattcgacctttttgtcggtgaatatctcagtgtctccattcagtacagtg
gaccgtaagaaacggccacgtaatgatagaagaatccaggaatgtgccatgtctattcaa
cggacgtttcaagaggctattatgggtcatttacattctcggaccgagattgtgatctcg
cttcatgttctggcacaagacggcgggttctttgctgcgtgtataaatgccaccagttta
gcattgatagatgctggtgttcccatgtacgactatgtcagcgcatgttcgactgcttta
tacgactcaatcagtcctcttctggaccctaacaatgccgaagagtcagatctgcctttc
ctcactgtagccactatcggcaagaccgaaaaagtatctatgcttctcctcgaaagcaaa
gtaccactcgaccgtctagaatcgctcattgctgtcactatctcgggctgtcattccctt
cgcgaccaaatggaccgtcaagtccgcaagcacggccacttacgcatcaccaaacgctcc
gaatag
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