KEGG   Sugiyamaella lignohabitans: AWJ20_705
Entry
AWJ20_705         CDS       T05270                                 
Symbol
SKI6
Name
(RefSeq) Ski6p
  KO
K11600  exosome complex component RRP41
Organism
slb  Sugiyamaella lignohabitans
Pathway
slb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWJ20_705 (SKI6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slb03019]
    AWJ20_705 (SKI6)
Messenger RNA biogenesis [BR:slb03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     AWJ20_705 (SKI6)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     AWJ20_705 (SKI6)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 30037767
NCBI-ProteinID: XP_018734927
UniProt: A0A167D414
LinkDB
Position
A:complement(2244740..2245285)
AA seq 181 aa
MNLDSTFLSVNISVSPFSTVDRKKRPRNDRRIQECAMSIQRTFQEAIMGHLHSRTEIVIS
LHVLAQDGGFFAACINATSLALIDAGVPMYDYVSACSTALYDSISPLLDPNNAEESDLPF
LTVATIGKTEKVSMLLLESKVPLDRLESLIAVTISGCHSLRDQMDRQVRKHGHLRITKRS
E
NT seq 546 nt   +upstreamnt  +downstreamnt
atgaatttggattcgacctttttgtcggtgaatatctcagtgtctccattcagtacagtg
gaccgtaagaaacggccacgtaatgatagaagaatccaggaatgtgccatgtctattcaa
cggacgtttcaagaggctattatgggtcatttacattctcggaccgagattgtgatctcg
cttcatgttctggcacaagacggcgggttctttgctgcgtgtataaatgccaccagttta
gcattgatagatgctggtgttcccatgtacgactatgtcagcgcatgttcgactgcttta
tacgactcaatcagtcctcttctggaccctaacaatgccgaagagtcagatctgcctttc
ctcactgtagccactatcggcaagaccgaaaaagtatctatgcttctcctcgaaagcaaa
gtaccactcgaccgtctagaatcgctcattgctgtcactatctcgggctgtcattccctt
cgcgaccaaatggaccgtcaagtccgcaagcacggccacttacgcatcaccaaacgctcc
gaatag

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