Streptomyces lydicus 103: SL103_01555
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Entry
SL103_01555 CDS
T04699
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slc
Streptomyces lydicus 103
Brite
KEGG Orthology (KO) [BR:
slc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slc03016
]
SL103_01555
Enzymes [BR:
slc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SL103_01555
Transfer RNA biogenesis [BR:
slc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SL103_01555
Prokaryotic type
tRNA splicing ligases
SL103_01555
BRITE hierarchy
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GFIT
Motif
Pfam:
RtcB
DUF7857
SH3_actinomycetes
Motif
Other DBs
NCBI-ProteinID:
AOP45099
UniProt:
A0A1D7VEE4
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All DBs
Position
357004..358197
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AA seq
397 aa
AA seq
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MSYVEVPGARVPIRMWTDPATVEDVAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQVLPVGRGMHDDPVDPG
RLHGVPTAGWDDFWTRFDGVAEAVRFRRERAVKQMGSLGGGNHFWEFCVDADQSVWIMLH
SGSRNIGKELAEYHMGVAHKLPQNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKHNR
EIMMALTQDVIRREFKKAKVTFDQVISCHHNYVAEERYDGMDLLVTRKGAIRAGGGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRRMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VIDEIPGAYKPIEQVIEQQRDLVEVVAHLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaggtgccgggcgcgcgggtaccgatccggatgtggacggatccggcc
acggtcgaggacgtcgccatgcagcagctgcgcaatgtcgccaccctcccgtggatcaag
ggcctggccgtgatgccggacgtgcactacggcaagggcgccacggtcggctcggtgatc
gcgatgcgcggcgcggtctgcccggcggcggtcggcgtcgacatcggctgcgggatgagc
gcggtgaagacctcgctgaccgccaacgacctgcccggcgacctctcccggctccgctcg
aagatcgagcaggtgctcccggtggggcggggcatgcacgacgacccggtcgaccccggg
cggctgcacggcgtcccgacggccgggtgggacgacttctggacgcggttcgacggggtc
gcggaagcggtcaggttccgccgggagcgggccgtgaagcagatgggctcgctcggcggc
ggcaaccacttctgggaattctgcgtcgacgccgaccagtccgtgtggatcatgctgcac
tccgggtcgcgcaacatcggcaaggagctggccgagtaccacatgggcgtggcccacaag
ctgccgcagaaccagggcctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaagcacaaccgc
gagatcatgatggccctgacccaggacgtgatccgccgggagttcaagaaggccaaggtc
accttcgaccaggtcatctcctgccaccacaactatgtggcggaggagcggtacgacggc
atggacctcctggtgacccgtaagggcgccatccgggcgggcggcggcgagtacggcatc
atccccggctcgatgggcaccggctcgtacatcgtcaagggcctcgggaacgccgcgtcc
ttcaactcggcctcgcacggcgccggccgcaggatgagccggaacgccgccaagaagcgc
ttctcgacgcgtgacctggaggagcagacgcggggtgtggagtgccgcaaggactccggc
gtgatcgacgagatcccgggcgcctacaagccgatcgagcaggtcatcgagcagcagcgg
gacctggtggaggtcgtcgcccacctcaagcaggtcatctgcgtgaagggttga
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