Streptomyces lydicus 103: SL103_26470
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Entry
SL103_26470 CDS
T04699
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
slc
Streptomyces lydicus 103
Pathway
slc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SL103_26470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slc03400
]
SL103_26470
Enzymes [BR:
slc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SL103_26470
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SL103_26470
DNA repair and recombination proteins [BR:
slc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SL103_26470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
Zn_ribbon_RRN7
Zn_ribbon_8
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AOP49321
UniProt:
A0A1D7VRG9
LinkDB
All DBs
Position
complement(6098551..6099417)
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AA seq
288 aa
AA seq
DB search
MPEMPEVEALGRFLEERLAGRAVARVYPVSVAALKTFEPPLTALEGRAFDGVARHGKFLA
LRADGLYLVMHLARAGWVRWSERLPTAPPRPGKGPLALRVRLAAPDGAGFDVTEAGTQKH
LAVYVVTDPRDVPGIARLGPDPLAEDFTRAAFAGMLAGERRQIKGVLRDQGVLAGIGNAY
SDEILHAARMSPFKLAATLSEDEVTLLYTAVRATLGEAVERARGLAPADLKEGKRSGLRV
HGRTGEPCPVCGDTIREVSFSDSALQYCPTCQTGGKPLADRRLSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagatgcccgaggtggaggcgctgggccggttcctggaggagcggctggccggc
cgggcggtcgcgcgggtgtatcccgtgtcggtggccgcgttgaagacctttgagccgccg
ctgaccgcgctggaggggcgggcgttcgacggggtggcgcgccacgggaagtttctggcg
ctgcgcgccgacgggctgtacctggtgatgcacctggccagggcgggttgggtgcggtgg
agcgaacgactgccgacggcgccgccacgcccgggcaaggggccgctggcgctgcgggtg
cggctcgccgcaccggacggggcgggcttcgacgtgaccgaggcgggcacccagaaacac
ctcgcggtgtatgtcgtgaccgatccgcgggacgtaccggggatcgcgcggctggggccc
gatccgctggccgaggacttcacccgggcggccttcgccgggatgctggcgggggagcgg
cggcagatcaagggagtcctgcgggaccagggcgtactggcggggatcggcaacgcctac
tccgacgagatcctgcacgcggcgcggatgtcgccgttcaagctggccgccacgctgtcc
gaggacgaggtgaccctgctgtacacggcggtccgcgcgacgctgggtgaagcggtcgaa
cgggcccgcgggctggcgccggcggacctcaaggaggggaagaggagcgggctgcgggtg
cacgggcggaccggcgagccctgcccggtctgcggggacacgatccgcgaggtgtccttc
agcgattcggcattgcagtactgccccacctgccagaccggcggcaagccgctggccgac
cgccggttgtcgcggctgctgaagtag
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