Streptomyces lydicus 103: SL103_27390
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Entry
SL103_27390 CDS
T04699
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
slc
Streptomyces lydicus 103
Pathway
slc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SL103_27390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slc03019
]
SL103_27390
Messenger RNA biogenesis [BR:
slc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SL103_27390
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AOP49467
UniProt:
A0A1D7VRV6
LinkDB
All DBs
Position
complement(6331846..6333531)
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDVDGIVLTHGHEDHIGAVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGDRERLGPFECEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
MDGRLTDLPAFAKLGEEGIDLLLVDSTNAEVPGFVPPERDISNVIRQVFAGAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARELGYLKVPAGLVVDVKMLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
RIVIAEDGVAVDLVGGVAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFV
VVDSSTGKIVGGPDLHARGSGIDDASLAGVSPKIDEALAKAAQDGVAEPHQLQQLVRRTV
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagctcggcgccccgccgaagcttcccaagggcggcctgcgc
gtcacccccctcggcggcctgggtgaaatcggccgcaacatgacggtcttcgaatacggc
ggccggctgctgatcgtcgactgcggagtgctcttcccggaggaggagcagcccggaatc
gacttgatcctgccggacttctcgtccatcagggatcgcctcgacgacgtggacggcatc
gtgctcacccacggccacgaggaccacatcggcgctgtcccctacctcctgcgcgagaag
ccggacatcccgctcatcggctcgaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccgtacacgctggaggtcgccgagggcgaccgcgagcgtctgggc
cccttcgagtgcgaattcgtcgcggtcaaccactccatccccgacgcgctggccgtcgcc
atccgcacccccgcgggcatggtcgtgcacaccggcgacttcaagatggaccagctcccg
atggacggccggctgaccgacctcccggccttcgcgaagctcggcgaggaaggcatcgac
ctcctcctcgtcgactcgacgaacgccgaggtccccggcttcgtgccgcccgagcgcgac
atctcgaacgtcatccgccaggtcttcgcgggtgcccagaagcgcatcatcgtggccagc
ttcgccagccatgtgcaccgcatccagcagatcctcgacgcggcacacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgagctgggc
tacctcaaggtcccggccggcctggtcgtcgacgtcaagatgctcgacgacctccccgac
gacgaggtcgtgctggtctgcaccggctcccagggcgagccgatggcggctctctcccgg
atggccaaccgcgaccaccagatccgcatcgtccagggcgacacggtgatcctggcgtcg
tccctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctcacccgctgg
ggcgcgaacgtcgtccacaagggcaacgccaaggtccatgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtgcacggc
gaatggcgccatctgcgcgccaacgccgagctgggcgccctgaccggcgtaccgaaggac
cggatcgtcatcgccgaggacggcgtcgccgtcgacctggtcggcggtgtcgccaagatc
gtcggcaaggtccaggccggttacgtctacgtcgacggcctctcggtcggcgacgtcacg
gaaacctccctcaaggaccgccgcatcctcggcgacgagggcatcatctccgtcttcgtg
gtcgtcgactccagcaccggaaagatcgtcggtggcccggacctgcacgcccgcggctcc
ggcatcgacgacgcgtccctggcaggcgtgtctcccaagatcgatgaagcgctggccaag
gccgcccaggacggcgtcgccgaaccccaccagctccagcagctggtccgccgcacggtc
ggcaagtgggtctccgacaactaccgccgccgcccgatgatcctccccgtggtcgtcgag
gtctga
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