Streptomyces lydicus A02: T261_2265
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Entry
T261_2265 CDS
T03756
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sld
Streptomyces lydicus A02
Pathway
sld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T261_2265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sld03019
]
T261_2265
03400 DNA repair and recombination proteins [BR:
sld03400
]
T261_2265
Enzymes [BR:
sld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T261_2265
Messenger RNA biogenesis [BR:
sld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T261_2265
DNA repair and recombination proteins [BR:
sld03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
T261_2265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
AJT63948
LinkDB
All DBs
Position
2442834..2444999
Genome browser
AA seq
721 aa
AA seq
DB search
MSNEDLRAAADAVLSRLVGDPGGEARLREDQWRAIEALVADHRRALVVQRTGWGKSAVYF
VATALLRARGSGPTVIVSPLLALMRNQVEAASRAGIHARTINSSNTEEWESVQAAVAAGE
VDVLLVSPERLNNPDFRDQVLPELAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLAGL
PPGVPVLATTATANARVTADVAEQLGTGEGTAEALVLRGPLDRESLSLGVLALPDAAHRL
AWLADHLDELPGSGIIYTLTVAAAEEVTAFLRHRGHTVAPYTGRTENADRQQAEDDLLAN
RVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVKHAEVLLLPGREDE
AIWQYFASLAFPPEEQVRRTLDVLAAAGRPVSLPALEPQVELRRSRLEIMLKVLDVDGAV
HRVKGGWTATGRPWSYDAERYAWVARQRAAEQQAMREYAATAGCRMEFLRRQLDDEAAVA
CGRCDNCAGARFTAEVSAASLDAARGELGRPGVEVEPRRMWPTGLPAIGLDLKGRIPAGE
LAATGRALGRLSDIGWGNRLRPMLAPQAPDGPVPDDVAAAVVTVLADWAKGPGGWASGED
GAPARPVGVVCLSSRTRPQLIRSLAERISSVGRMPFLGTVTSVDDGGDGRVPRSNSAQRL
RALHGALSVPPELAQALASADGPVLLVDDYADTGWTLAVAARLLRGAGAVGVFPLVLAVQ
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaagacctgcgtgccgcggccgatgccgtcctgtcccgactcgtcggggat
cccggcggcgaggcccggctgcgcgaggatcagtggcgggcgatcgaggcgctggtcgcc
gaccaccgccgggcgctggtcgtgcagcgcacgggctggggcaagtccgcggtctatttc
gtcgcgacggcgctgctgcgggcgcgtggcagcggcccgacagtgatcgtttcgccgctg
ctcgcgctgatgcgcaaccaggtggaggcggcctcgcgggccgggatccacgcgcgcacg
atcaactcctccaacaccgaggagtgggagagcgtgcaggccgcggtggcggccggcgag
gtcgacgttctgctggtgagccccgagcggctcaacaaccccgatttccgcgatcaggtg
ctgcccgagctcgccgcggccaccggcctgctggtggtcgacgaagcgcactgcatctcc
gactggggccatgacttccggccggactaccgccggctgcgcacgatgctcgccggtctc
ccgcccggtgtgccggtgctcgcgacgaccgccaccgccaacgcccgggtgacggccgat
gtcgccgagcagctggggacgggcgagggcaccgccgaggcgctggtgctgcggggcccg
ctggaccgggagagcctgagtctgggcgtgctggcgctgccggacgccgcgcaccggctg
gcgtggctggcggaccatctggacgagctgccgggctcggggatcatctacaccctcacc
gtcgccgccgccgaggaggtcacggcgttcctgcggcaccgggggcacacggtcgccccg
tacaccggcaggacggagaacgccgaccggcagcaggccgaggacgacctgctggccaac
cgggtcaaggcgctggtggcgacgtccgcgctggggatgggcttcgacaagcccgacctg
gggttcgtggtgcacctgggctcgccgtcgtcgcccatcgcgtactaccagcaggtgggg
cgggccgggcgtggggtcaagcatgccgaggtgctgctgctgccgggccgcgaggacgag
gcgatctggcagtacttcgcgtcgctggcgttcccgcccgaggagcaggtgcgccggacg
ctggacgtcctggcggcggccggccggccggtgtcgctgccggcactggagccgcaggtc
gaactgcgccgctcccgcctggagatcatgctcaaggtgctcgatgtggacggcgccgtg
caccgcgtcaagggcggctggacggccaccggccggccgtggtcgtacgacgcggaacgc
tatgcgtgggtggcccggcagcgtgcggcggagcagcaggcgatgcgggagtacgccgcc
acggcgggctgccggatggagttcctgcggcggcagctggacgacgaggcggcggtggcg
tgcggccgctgtgacaactgcgccggggcgaggttcaccgccgaggtctccgccgcatcg
ctggacgcggcacgtggtgaactggggcgcccgggtgtggaggtggagccgcgccggatg
tggccgacggggctgccggccatcggcctggacctcaaggggcgtattccggcgggtgag
ctggccgccaccggccgcgccctgggcaggctgtcggacatcgggtggggcaaccggctg
cggccgatgctcgcaccgcaggcaccggacggtccggtgcccgacgatgtggcggccgcc
gtggtcacggtgctcgccgactgggccaaggggcccgggggttgggcctccggggaggac
ggcgcaccggcccgcccggtgggtgtcgtctgcctctcgtcgcgcacccgcccgcagctg
atccgctcgctggcggagcggatcagctcggtgggcaggatgccgttcctggggacggtg
acatcggtggacgacggaggggacggcagggttccgcgcagcaacagcgcccagcggctg
cgggccctgcacggtgcactgagcgtgccgccggagctggcgcaggcgctggcgtcggcg
gacggcccggtgctgctggtggacgactacgcggacaccggctggacgctggcggtggcc
gcccggctgttgcgcggcgccggggccgtcggggtgtttccgctggtcctcgccgtacag
ggatag
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